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Updating polynomial doc
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noe committed Jan 12, 2017
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Expand Up @@ -164,10 +164,10 @@ A second example for lossless seeds (from Kucherov,Noe&Roytberg) on the previous
Polynomial form
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When the probability *p* to generate a match is not fixed (for example p=0.7 in all the previous examples), Mak & Benson have proposed to use a polynomial form and select what they called dominant seeds. We have noticed that this dominance applies as well for any other i.i.d criteria as Hit Integration, Lossless seeds, ... (see <http://cristal.univ-lille.fr/~noe/files/spaced_seed_dominance.pdf>) so:
When the probability *p* to generate a *match* is not fixed (for example *p=0.7* was set in all the previous examples), Mak & Benson have proposed to use a polynomial form and select what they called **dominant seeds**. We have noticed that this dominance applies as well for any other i.i.d criteria as the *Hit Integration* (Chung & Park), for *Lossless seeds*, and several discrete models ... (see <http://cristal.univ-lille.fr/~noe/files/spaced_seed_dominance.pdf>) so the flag :

-p
to activate dominant selection and output polynomial coefficients


is added in the current commited version of iedera.
is added in the current commited version of iedera (master branch).

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