Releases: laminlabs/lamindb
Releases Β· laminlabs/lamindb
Release 0.71.2
What's Changed
- Add links to tutorials of bionty registries by @Zethson in #1632
- β¨ Enable to add parameters to
ln.track()
by @falexwolf in #1637
Full Changelog: 0.71.1...0.71.2
Release 0.71.1
What's Changed
- πEscape \ properly for anndata_mouse_sc_lymph_node dataloader by @Zethson in #1613
- β»οΈ Consistent naming of
set_managed_storage
by @falexwolf in #1615 - β»οΈ Extend valid suffixes to composite suffixes by @falexwolf in #1619
- β‘οΈ Zarr and cache improvements by @Koncopd in #1620
- β»οΈ Upon upload switch to virtual key by @falexwolf in #1622
- π¨ Use the same uid for same feature set in transfer by @sunnyosun in #1621
- πΈ Upload source code of scripts upon
ln.finish()
by @falexwolf in #1624 - π¨ Make features.add_feature_set user level by @sunnyosun in #1626
- π₯ Remove
artifact.view_tree()
by @falexwolf in #1627 - β»οΈ Better treatment of
current_user_id
by @falexwolf in #1628 - β»οΈ Refactor nbproject usage & tutorials by @falexwolf in #1629
Full Changelog: 0.71.0...0.71.1
Release 0.71.0
What's Changed
- β»οΈ Refactor noxfile and move
aws
andgcp
extras tolamindb-setup
by @falexwolf in #1604 - β»οΈ Make save return self by @falexwolf in #1606
- β¬οΈ Upgrade fsspec by @Koncopd in #1608
- β»οΈ Refactor storage management by @falexwolf in #1605
- β¨ Proper progress bars for upload and download by @Koncopd in #1610
- β¨ Manage multiple storage locations with integrity by @falexwolf in #1611
Full Changelog: 0.70.4...0.71.0
Release 0.70.4
What's Changed
- β»οΈ Better user feedback on folder-like artifacts by @falexwolf in #1589
- β‘οΈ Speed up
latest_version
by @falexwolf in #1594 - πΈ In
.setup.delete()
, check for data deletion & delete from hub by @falexwolf in #1595 - π Rename
StorageSettings.is_cloud
toStorageSettings.type_is_cloud
by @falexwolf in #1596 - βοΈ Fix suffix checking for vitessce by @sunnyosun in #1598
- β More tests for running scripts by @falexwolf in #1599
- β¨ Allow passing path to
.from_anndata
by @sunnyosun in #1600 - βοΈ Fix guide query by @sunnyosun in #1601
- β»οΈ Some refactoring of lamindb-setup by @falexwolf in #1602
Full Changelog: 0.70.3...0.70.4
Release 0.70.3
What's Changed
- πΈ Raise error if transforms of type notebook or script are passed manually by @falexwolf in #1584
- π Fix detection of AnnData in zarr and h5ad, fix directory upload paths by @Koncopd in #1587
- πΈ Update metadata like description upon re-running by @falexwolf in #1588
Full Changelog: 0.70.2...0.70.3
Release 0.70.2
What's Changed
- π Fix backed for non-adata zarr by @Koncopd in #1579
- πΈ Replace
i_saved_the_notebook
with timestamp comparison by @falexwolf in #1581 - π Fix notebook tests by @falexwolf in #1583
- β»οΈ Separate
VitessceConfig
from its referenced datasets by @falexwolf in #1582
Full Changelog: 0.70.1...0.70.2
Release 0.70.1
What's Changed
- π Rename resources in
core.storage
& eliminate.zrad
from code base by @falexwolf in #1577 - ποΈ Fix public_source in inspect by @sunnyosun in #1578
Full Changelog: 0.70.0...0.70.1
Release 0.70.0
What's Changed
- π Simplify describe fields by @sunnyosun in #1569
- πΈ Update data lineage information in case transform is re-run by @falexwolf in #1571
- πΈ Error if the exact same artifact is returned from trash by @falexwolf in #1550
- π Deprecate
stage()
in favor ofcache()
by @falexwolf in #1572 - β»οΈ Simplify
ln.finish()
by @falexwolf in #1573 - β»οΈ Prettify Vitessce integration by @falexwolf in #1574
- π Distinguish replicated output collections from artifacts by @falexwolf in #1575
Full Changelog: 0.69.10...0.70.0
Release 0.69.10
What's Changed
- β¬οΈ Upgrade anndata dependency by @Koncopd in #1555
- π Improve introduction by @falexwolf in #1556
- β¨ Support MuData by @sunnyosun in #1554
- π Fix passing organism to Annotate by @sunnyosun in #1557
- β»οΈ Enable simple transfer of labels from artifacts to collections by @falexwolf in #1559
- π Add wetlab schema to docs by @falexwolf in #1560
- πΈ Eliminate kwargs by @sunnyosun in #1561
- β¬οΈ Upgrade submodules by @sunnyosun in #1564
- πΈ Allow passing additional fields to add_new_from by @sunnyosun in #1565
- π¨ Polish from_values by @sunnyosun in #1566
- ποΈ Fix annotate var index type by @sunnyosun in #1567
- β¨ Add
.obsm
and.layers
toMappedCollection
by @Koncopd in #1562
Full Changelog: 0.69.9...0.69.10
Release 0.69.9
What's Changed
- π·οΈ Fix more typing issues, also test on python 3.9 by @falexwolf in #1552
- π Fix clashes for multi process by @falexwolf in #1553
Full Changelog: 0.69.8...0.69.9