0.3.7

What's Changed

• ♻️ Refactor pipeline logging by @bpenteado in #193

Full Changelog: 0.3.6...0.3.7

0.3.6

What's Changed

• 🐛 Fix synchronization error in load by @Koncopd in #191
• 🍱 Updated cell ranger test dir by @sunnyosun in #192
• ⬆️ Updated lnbfx version by @sunnyosun in #194

Full Changelog: 0.3.5...0.3.6

0.3.5

What's Changed

• Update lndb_hub version by @fredericenard in #176
• 📝 Prettify documentation by @falexwolf in #178
• ♻️ Refactored tutorials by @sunnyosun in #179
• 🚚 Rename guides to faq and tutorials to guide by @falexwolf in #180
• 🚚 Rename return_df to as_df in query by @sunnyosun in #181
• ♻️ Refactored query by @sunnyosun in #182
• ⬆️ Updated schema module versions by @sunnyosun in #184
• ♻️ Segregate pipeline ingestion (runs, pipelines, and pipeline-linked dobjects) from non-pipeline ingestion (dobjects) by @bpenteado in #183
• 💄 Added sidebar to guide by @sunnyosun in #185
• 📝 Add flow data ingestion example by @sunnyosun in #186
• ♻️ Split ingestion logic into IngestObject and IngestPipeline by @bpenteado in #188
• ⬆️ Updated setup version by @sunnyosun in #189

Full Changelog: 0.3.4...0.3.5

0.3.4

What's Changed

• 🎨 Simplify loading data by @falexwolf in #163
• 👷 Get rid of sqm warnings by @falexwolf in #164
• 🎨 Move header call to nb, re-export all of nbproject by @falexwolf in #165
• 🚚 Rename .do to .db by @falexwolf in #166
• 🎨 Remove track submodule, move session, rename biogram to erdiagram by @falexwolf in #167
• 🚸 Improve delete function by @falexwolf in #169
• 🔥 Removed examples dir by @sunnyosun in #170
• Uncomment out sharing tests by @fredericenard in #168
• 🚚 Move problems page to lamin-profile by @falexwolf in #171
• 🚸 Fix pipeline ingestion logging by @bpenteado in #158
• 🤡 R&D team simulation by @sunnyosun in #172
• ⬆️ Update to sqm 0.0.8 to silence the warnings by @sunnyosun in #174
• ✨ Allow querying dobjects by biological entities by @sunnyosun in #175

Full Changelog: 0.3.3...0.3.4

0.3.3

What's Changed

• ✨ Populate dtransform_in by @falexwolf in #153
• 🐛 Fix population of dtransform by @falexwolf in #155
• 🍱 Add scrnaseq cellranger dataset by @bpenteado in #151
• ♻️ Update pipeline ingestion to lnschema_core 0.5.0 by @bpenteado in #154
• ⬆️ Upgrade to lnschema_core 0.5.1 by @falexwolf in #156
• ⬆️ Updated dependencies by @sunnyosun in #157
• ⬆️ Updated to sqm 0.0.7 by @sunnyosun in #159
• ⬆️ Updated to bionty 0.2.2 by @sunnyosun in #160
• ✨ Use cell_marker feature model for flow data by @sunnyosun in #161
• 👷 Allow stripping notebooks again, upgrade nbproject_test by @falexwolf in #162

Full Changelog: 0.3.2...0.3.3

0.3.2

What's Changed

• ♻️ Refactor lnbfx integration by @bpenteado in #149
• ⬆️ Updated dependencies by @sunnyosun in #152

Full Changelog: 0.3.1...0.3.2

0.3.1

What's Changed

• 🚧 Temporary solution to extend modules by @sunnyosun in #150

Full Changelog: 0.3.0...0.3.1

0.3.0

What's Changed

• 🏗️ Separate settings into user vs. instance and one file per instance by @fredericenard in #83
• 🚸 Offer manual way of completing a migration by @falexwolf in #86
• ✨ Enable annotating features of dobjects by @sunnyosun in #81
• 🚚 Move db API from admin to dev by @falexwolf in #87
• 🎨 Use modular schema structure by @falexwolf in #88
• 🔼 Upgrade to schema 0.2.1 by @falexwolf in #89
• ✨ Annotate biometa when annotating genes by @sunnyosun in #90
• 🔥 Switched logger to use lamin-logger by @sunnyosun in #92
• 💚 Add time out of 6 min to github actions by @Koncopd in #93
• 🚸 Let the CLI have actual subcommands by @falexwolf in #96
• 🍱 Adapted to lndb-schema-biology 0.1.1 by @sunnyosun in #97
• 🚚 Move CLI code to lndb-cli by @falexwolf in #98
• 🚚 Account for table construction in lndb-cli by @falexwolf in #99
• ⬆️ Upgrade to lndb-cli 0.2.0 by @falexwolf in #101
• 🆙 Upgrade lndb_setup to 0.3.0 by @falexwolf in #102
• 🔥 Moved readout vocab to bioreader by @sunnyosun in #103
• ✨ Enable sharing dobjects & instances in the hub by @fredericenard in #69
• ♻️ Refactor sharing on the hub by @falexwolf in #104
• 🚚 Move out lndb_hub by @falexwolf in #105
• ⬆️ Upgrade to lndb_schema_core 0.2.0 by @falexwolf in #106
• 📝 Improve get-started and collaborate tutorials by @falexwolf in #108
• 📝 Re-write landing page by @falexwolf in #109
• 🚧 Annotate features during ingestion by @sunnyosun in #110
• ⬆️ Upgrade to lamindb-schema 0.3.1 by @falexwolf in #111
• 📝 Add a problem statement by @falexwolf in #112
• ✨ Query and update metadata by @sunnyosun in #113
• 🩹 Some fixes of ingesting in-memory dobjects and an analysis draft by @falexwolf in #114
• 🎨 Prettified and reordered nbs, renamed load to load.entity by @sunnyosun in #115
• ⬆️ Upgrade to lndb_setup 0.4.0 by @falexwolf in #116
• 📝 Prettify user mentions in tutorials & guides by @falexwolf in #117
• ✨ Allow ingesting fcs files and querying genes by @sunnyosun in #118
• 📝 Polish get-started & query-data by @falexwolf in #119
• 📝 Polish the 4 key tutorial pages by @falexwolf in #121
• 📝 Polish the introspect tutorial by @falexwolf in #122
• ⬆️ Upgrade to lndb_setup 0.4.2 by @falexwolf in #123
• 👷 Cleaner CI environment switching by @falexwolf in #125
• 🚚 Renamed meta.annotate to do.link by @sunnyosun in #126
• ⬆️ Upgrade to lndb_schema_core 0.3.0 by @falexwolf in #127
• ⬆️ Upgrade to lndb_setup 0.5.0 by @falexwolf in #128
• 🚚 Migrate bioreader to bioreadout by @sunnyosun in #129
• ✨ New readout_type table, registered species by @sunnyosun in #130
• ⚡ Ingest genes properly by @sunnyosun in #131
• 👽 Adapt to lndb-schema-bionty 0.1.4 by @sunnyosun in #134
• 📝 Updated docs by @sunnyosun in #135
• ✨ Integrate bioinformatics pipline runs by @bpenteado in #133
• 🚚 Rename schema modules and bioinformatics module by @falexwolf in #136
• ✨ Track storage root location by @fredericenard in #137
• ⬆️ Upgrade core schema to v0.4.0 by @falexwolf in #138
• ✨ Autogenerate query, update and delete functions by @sunnyosun in #139
• 💄 Added logging to update and delete by @sunnyosun in #141
• ⬆️ Upgrade lndb-hub to v0.5.0 by @fredericenard in #140
• ♻️ Cleaned up and added a mouse dataset by @sunnyosun in #142
• 🚚 Renamed id to key in update and delete APIs by @sunnyosun in #143
• ⬆️ Upgrade to lnbfx 0.2.0 by @falexwolf in #144
• 🚚 Renamed FeatureModel to LinkFeatureModel by @sunnyosun in #145
• Use id to reference storage by @fredericenard in #146
• ✏️ Fixed typo in check versions by @sunnyosun in #147
• 🏗️ Make tables within schema modules configurable by @falexwolf in #148

Full Changelog: 0.1.2...0.3.0