Release 0.76.16
See https://docs.lamin.ai/changelog/2024#db-0-76-16
What's Changed
- π¨ Refactor flatten_unique by @Zethson in #2121
- β¨ Add extra groups for all schemas by @Zethson in #2123
- π Recursive query of parents and children example by @Koncopd in #2126
- π Fix registering Gene columns in DataFrameCurator by @sunnyosun in #2131
- β¨ Truncate standardization output by @Zethson in #2103
- π Fix hard-coded "name" field during search by @sunnyosun in #2130
- π Fix transfering artifacts from a source instance with fewer schema modules by @sunnyosun in #2132
- β¨ Support Hugging Face paths by @Koncopd in #2128
- π Explain what can be registered as Artifact and show Hugging Face integration by @Koncopd in #2136
- π Add gene symbol usage and mapping FAQ by @Zethson in #2134
- β¨ Compute hash for files in Google Cloud Storage and Hugging Face by @Koncopd in #2139
- π¨ Improve saving validated output by @Zethson in #2140
- β¨ Warn if curating against gene symbols by @Zethson in #2142
- β¨ Raise TypeError if a string is passed to
var_index
ofAnnDataCurator
by @Zethson in #2105 - πΈ Validate minimum
uid
length by @falexwolf in #2144 - β Test registering GCP paths by @Koncopd in #2145
- π Deprecate
BioRecord.import_from_source
in favor ofBioRecord.import_source
by @Zethson in #2146 - π¨ Make EHRCurator immutable by @Zethson in #2149
- πΈ Enable autocompletion for inherited methods in Jupyter by @Koncopd in #2148
- π Add hide-output for some cells & links to storage engines by @Zethson in #2151
- β¬οΈ Upgrade anndata to 0.11.0 by @Koncopd in #2152
- β¬οΈ Upgrade fsspec to 2024.10.0 by @Koncopd in #2153
- β¨ Improve runtime formatting by @Zethson in #2157
- πΈ Enable to query with records from a different database instance by @falexwolf in #2164
- β¬οΈ Upgrade anndata to 0.11.1 by @Zethson in #2166
- β»οΈ Only apply exact length uid constraint for internal entities by @falexwolf in #2167
- β‘οΈ Improve speed and relevance of search by @Koncopd in #2163
- π¨ Improve runtime formatting code by @Zethson in #2162
- β‘οΈ Improve Record.search runtime by @Koncopd in #2168
- β¨ Support saving R code including
.qmd
and.Rmd
by @falexwolf in #2169 - πΈ Refactor
ln.track()
to improve logging and method signature by @falexwolf in #2176
Full Changelog: 0.76.15...0.76.16