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labgem / PPanGGOLiN Public

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Fix Contig Length Detection for GFF Parsing#301

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axbazin merged 8 commits intodevlabgem/PPanGGOLiN:devfrom gff_parsing_fixlabgem/PPanGGOLiN:gff_parsing_fixCopy head branch name to clipboard

Nov 19, 2024

+167-70

Conversation Commits8 (8)Checks Files changed

Commits

Commits on Nov 5, 2024

use ID in to check part genes instead of the id used by ppanggolin
JeanMainguy
committed
use debug for missing transtable in GFF parsing fct
JeanMainguy
committed

Commits on Nov 18, 2024

improve parsing fasta fct
JeanMainguy
committed
add overlap correction when parsing external fasta along GFF files
JeanMainguy
committed
rm uncessary warning making noisy to check if contig length was defined
JeanMainguy
committed
add check when parsing fasta content
JeanMainguy
committed
add test on parsing fasta function
JeanMainguy
committed
ensure circularity info is keep in all situation
JeanMainguy
committed

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