Update main.yml

labgem · Aug 27, 2024 · d0eb769 · d0eb769
1 parent 1773e2b
commit d0eb769
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -127,7 +127,7 @@ jobs:
       run: |
         cd testingDataset
         head genomes.fasta.list | sed 's/^/input_genome_/g' > genomes.fasta.head.list
-        ppanggolin projection --pangenome myannopang/pangenome.h5  -o projection_from_list_of_fasta --fasta genomes.fasta.head.list --gff --proksee --cpu $NUM_CPUS
+        # ppanggolin projection --pangenome myannopang/pangenome.h5  -o projection_from_list_of_fasta --fasta genomes.fasta.head.list --gff --proksee --cpu $NUM_CPUS
 
         # projection of a plasmid with chevron that have been added manually to test chevron handeling in GFF
         ppanggolin projection --pangenome myannopang/pangenome.h5 --anno GBFF/plasmid_NZ_CP007132_with_manually_added_chevrons.gff.gz --cpu $NUM_CPUS -o projection_plasmid_with_chevron