Skip to content

Commit

Permalink
Add todo warning in argparse
Browse files Browse the repository at this point in the history
  • Loading branch information
jpjarnoux committed Nov 27, 2023
1 parent 4e89016 commit bb7384d
Showing 1 changed file with 1 addition and 0 deletions.
1 change: 1 addition & 0 deletions ppanggolin/annotate/annotate.py
Original file line number Diff line number Diff line change
Expand Up @@ -626,6 +626,7 @@ def launch(args: argparse.Namespace):
translation_table=args.translation_table, kingdom=args.kingdom, norna=args.norna,
allow_overlap=args.allow_overlap, disable_bar=args.disable_prog_bar)
elif args.anno is not None:
# TODO add warning for option not compatible with read_annotations
read_annotations(pangenome, args.anno, cpu=args.cpu, pseudo=args.use_pseudo, disable_bar=args.disable_prog_bar)
if pangenome.status["geneSequences"] == "No":
if args.fasta:
Expand Down

0 comments on commit bb7384d

Please sign in to comment.