Merge pull request #173 from labgem/fix_non_uniq_ids

Fix usage of non uniq gene ids when writting sequences
labgem · Jan 25, 2024 · 91d0e39 · 91d0e39
2 parents da4a7e7 + 3947988
commit 91d0e39
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/VERSION b/VERSION
@@ -1 +1 @@
-2.0.1
+2.0.2
diff --git a/ppanggolin/formats/writeSequences.py b/ppanggolin/formats/writeSequences.py
@@ -38,8 +38,7 @@ def write_gene_sequences_from_annotations(genes_to_write: Iterable[Gene], file_o
     logging.getLogger("PPanGGOLiN").info(f"Writing all CDS sequences in {file_obj.name}")
     for gene in tqdm(genes_to_write, unit="gene", disable=disable_bar):
         if gene.type == "CDS":
-            gene_id = gene.ID if gene.local_identifier == "" else gene.local_identifier
-            file_obj.write(f'>{add}{gene_id}\n')
+            file_obj.write(f'>{add}{gene.ID}\n')
             file_obj.write(f'{gene.dna}\n')
     file_obj.flush()