apply black to ppanggolin python code

docs/conf.py

@@ -14,12 +14,14 @@
 
 # -- Project information -----------------------------------------------------
 
-project = 'PPanGGOLiN'
-copyright = '2023, LABGeM'
-author = 'Jérôme Arnoux'
+project = "PPanGGOLiN"
+copyright = "2023, LABGeM"
+author = "Jérôme Arnoux"
 
 # The full version, including alpha/beta/rc tags
-release = open(Path(__file__).resolve().parents[1]/"VERSION").read().rstrip()  # Get release number in the VERSION file
+release = (
+    open(Path(__file__).resolve().parents[1] / "VERSION").read().rstrip()
+)  # Get release number in the VERSION file
 
 
 # -- General configuration ---------------------------------------------------
@@ -33,21 +35,19 @@
     "sphinx.ext.duration",
     "sphinx.ext.autosectionlabel",
     "sphinx.ext.autodoc",
-    'sphinx_search.extension',
-    'sphinxcontrib.mermaid'
+    "sphinx_search.extension",
+    "sphinxcontrib.mermaid",
 ]
 
 
-source_suffix = {
-    '.md': 'markdown'
-}
+source_suffix = {".md": "markdown"}
 
 # Prefix document path to section labels, to use:
 # `path/to/file:heading` instead of just `heading`
 autosectionlabel_prefix_document = True
 
 # Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
+templates_path = ["_templates"]
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
@@ -60,9 +60,9 @@
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
-html_theme = 'sphinx_rtd_theme'
+html_theme = "sphinx_rtd_theme"
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
+html_static_path = ["_static"]

ppanggolin/RGP/__init__.py

@@ -1,3 +1,3 @@
 from .genomicIsland import subparser, launch
 from .spot import *
-from . import rgp_cluster
+from . import rgp_cluster