fix usage of random sample to be compatible with python 3.12

labgem · Aug 22, 2024 · 1109ceb · 1109ceb
1 parent 9abb654
commit 1109ceb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ppanggolin/nem/partition.py b/ppanggolin/nem/partition.py
@@ -321,7 +321,7 @@ def evaluate_nb_partitions(organisms: set, output: Path = None, sm_degree: int =
     newtmpdir = tmpdir / "eval_partitions"
 
     if len(organisms) > chunk_size:
-        select_organisms = set(random.sample(set(organisms), chunk_size))
+        select_organisms = set(random.sample(list(organisms), chunk_size))
     else:
         select_organisms = set(organisms)