Merge branch 'develop'

kircherlab · Jun 8, 2021 · 0aedd77 · 0aedd77
2 parents 203c2ea + 8248197
commit 0aedd77
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diff --git a/.gitignore b/.gitignore
@@ -38,3 +38,4 @@
 !CHANGELOG.md
 !*.smk
 *.code-workspace
+__pycache__
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -2,6 +2,16 @@
 
 ## develop
 
+## v0.3.2
+
+- Hotfix: fixed bug in get_refsample
+
+- update .gitignore
+
+## v0.3.1
+
+- Hotfix: unexpected behavior in conda environments
+
 ## v0.3.0
 
 - updated documentation

diff --git a/snakefile_GE_analysis.smk b/snakefile_GE_analysis.smk
@@ -9,7 +9,7 @@ samples.index.names = ["sample_id"]
 validate(samples, schema="workflow/schemas/samples.schema.yaml")
 
 def get_refsample(refsample):
-    return "results/intermediate/body/fft_summaries/fft_{}-{}_WPS.tsv.gz".format(refsample,samples["genome_build"].loc[samples["sample"] == refsample].values[0])
+    return "results/intermediate/{ID}/FFT_table/transcriptanno-{SAMPLE}-FFT_table.{GENOME}.tsv".format(ID = samples["ID"].loc[samples["sample"] == refsample].values[0], SAMPLE = refsample, GENOME = samples["genome_build"].loc[samples["sample"] == refsample].values[0])
 
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