Merge pull request #235 from kipoi/beluga-variant-scoring

Add variant scoring to DeepSEA/beluga
kipoi · Mar 2, 2021 · 7a1e911 · 7a1e911
2 parents be564c4 + e0a0403
commit 7a1e911
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/DeepSEA/beluga/model.yaml b/DeepSEA/beluga/model.yaml
@@ -51,6 +51,17 @@ schema:
     column_labels:
       - predictor_names.txt
 
+postprocessing:
+     variant_effects:
+       seq_input:
+         - seq
+       use_rc: true
+       scoring_functions:
+         - type: diff
+           default: true
+         - type: logit
+           default: true
+
 test:
  expect:
    url: https://s3.eu-central-1.amazonaws.com/kipoi-models/predictions/e988be6b74ad08b63d1b2000b428965828d789e6/DeepSEA/beluga/test.expect.pytorch.h5