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Merge pull request #78 from rgdoliveira/sync_main
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Sync main branch with Apache main branch
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@rgdoliveira
rgdoliveira authored Sep 9, 2024
2 parents 5bb3d4f + 6a994de commit 80ceac5
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Showing 33 changed files with 284 additions and 742 deletions.
2 changes: 1 addition & 1 deletion drools-base/src/main/java/org/drools/base/rule/accessor/DeclarationScopeResolver.java
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Expand Up @@ -109,7 +109,7 @@ private Map<String, Declaration> getAllExtendedDeclaration(RuleImpl rule, Map<St

public Declaration getDeclaration(String identifier) {
// it may be a local bound variable
for (final Iterator<RuleConditionElement> iterator = buildList.descendingIterator(); iterator.hasNext();) {
for (final Iterator<RuleConditionElement> iterator = buildList.iterator(); iterator.hasNext();) {
final Declaration declaration = iterator.next().resolveDeclaration( identifier );
if ( declaration != null ) {
return declaration;
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6 changes: 3 additions & 3 deletions drools-beliefs/pom.xml
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Expand Up @@ -95,10 +95,10 @@
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
<scope>test</scope>
</dependency>
</dependency>
<dependency>
<groupId>org.assertj</groupId>
<artifactId>assertj-core</artifactId>
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15 changes: 8 additions & 7 deletions drools-beliefs/src/test/java/org/drools/beliefs/bayes/BayesAbsorbtionTest.java
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Expand Up @@ -20,15 +20,16 @@

import org.drools.beliefs.graph.Graph;
import org.drools.beliefs.graph.GraphNode;
import org.junit.Test;
import org.junit.jupiter.api.Test;

import java.util.Arrays;

import static org.assertj.core.api.Assertions.assertThat;
import static org.drools.beliefs.bayes.GraphTest.addNode;
import static org.drools.beliefs.bayes.GraphTest.bitSet;
import static org.drools.beliefs.bayes.JunctionTreeTest.assertArray;
import static org.drools.beliefs.bayes.JunctionTreeTest.scaleDouble;


public class BayesAbsorbtionTest {

@Test
Expand All @@ -37,7 +38,7 @@ public void testDivide1() {
double[] oldD = new double[] { 2, 4, 1 };
double[] r = BayesAbsorption.dividePotentials(newD, oldD);

assertArray(new double[]{5, 2, 4}, scaleDouble(3, r));
assertThat(scaleDouble(3, r)).containsExactly(5, 2, 4);
}

@Test
Expand All @@ -46,7 +47,7 @@ public void testDivide2() {
double[] oldD = new double[] { 0.1, 0.2, 0.3, 0.4 };
double[] r = BayesAbsorption.dividePotentials(newD, oldD);

assertArray(new double[]{5.0, 5.0, 5.0, 5.0}, scaleDouble(3, r));
assertThat(scaleDouble(3, r)).containsExactly(5.0, 5.0, 5.0, 5.0);
}

@Test
Expand Down Expand Up @@ -94,7 +95,7 @@ public void testAbsorption1() {
BayesAbsorption p = new BayesAbsorption(sepVarPos, oldSepPotentials, sep.getPotentials(), sepVarMultipliers, vars, node1.getPotentials());
p.absorb();

assertArray(new double[]{0.035, 0.135, 0.3, 0.529}, scaleDouble(3, node1.getPotentials()));
assertThat(scaleDouble(3, node1.getPotentials())).containsExactly(0.035, 0.135, 0.3, 0.529);
}

@Test
Expand Down Expand Up @@ -145,7 +146,7 @@ public void testAbsorption2() {
BayesAbsorption p = new BayesAbsorption(sepVarPos, oldSepPotentials, sep.getPotentials(), sepVarMultipliers, vars, node1.getPotentials());
p.absorb();

assertArray(new double[]{ 0.01, 0.019, 0.055, 0.073, 0.137, 0.163, 0.254, 0.289 }, scaleDouble(3, node1.getPotentials()));
assertThat(scaleDouble(3, node1.getPotentials())).containsExactly(0.01, 0.019, 0.055, 0.073, 0.137, 0.163, 0.254, 0.289);
}

@Test
Expand Down Expand Up @@ -197,6 +198,6 @@ public void testAbsorption3() {
BayesAbsorption p = new BayesAbsorption(sepVarPos, oldSepPotentials, sep.getPotentials(), sepVarMultipliers, vars, node1.getPotentials());
p.absorb();

assertArray(new double[]{0.01, 0.038, 0.028, 0.075, 0.139, 0.222, 0.194, 0.295}, scaleDouble(3, node1.getPotentials()));
assertThat(scaleDouble(3, node1.getPotentials())).containsExactly(0.01, 0.038, 0.028, 0.075, 0.139, 0.222, 0.194, 0.295);
}
}
12 changes: 6 additions & 6 deletions drools-beliefs/src/test/java/org/drools/beliefs/bayes/BayesProjectionTest.java
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Expand Up @@ -20,11 +20,11 @@

import org.drools.beliefs.graph.Graph;
import org.drools.beliefs.graph.GraphNode;
import org.junit.Test;
import org.junit.jupiter.api.Test;

import static org.assertj.core.api.Assertions.assertThat;
import static org.drools.beliefs.bayes.GraphTest.addNode;
import static org.drools.beliefs.bayes.GraphTest.bitSet;
import static org.drools.beliefs.bayes.JunctionTreeTest.assertArray;
import static org.drools.beliefs.bayes.JunctionTreeTest.scaleDouble;

public class BayesProjectionTest {
Expand Down Expand Up @@ -66,7 +66,7 @@ public void testProjection1() {
BayesProjection p = new BayesProjection(vars, node1.getPotentials(), sepVarPos, sepVarMultipliers, projectedSepPotentials);
p.project();

assertArray(new double[]{0.1, 0.2, 0.3, 0.4}, scaleDouble(3, projectedSepPotentials));
assertThat(scaleDouble(3, projectedSepPotentials)).containsExactly(0.1, 0.2, 0.3, 0.4);
}

@Test
Expand Down Expand Up @@ -110,7 +110,7 @@ public void testProjection2() {
p.project();

// remember it's been normalized, from 0.3, 0.7, 1.1, 1.5
assertArray(new double[]{0.083, 0.194, 0.306, 0.417}, scaleDouble(3, projectedSepPotentials));
assertThat(scaleDouble(3, projectedSepPotentials)).containsExactly(0.083, 0.194, 0.306, 0.417);
}

@Test
Expand Down Expand Up @@ -156,7 +156,7 @@ public void testProjection3() {
p.project();

// remember it's been normalized, from 0.4, 0.6, 1.2, 1.4
assertArray(new double[]{0.111, 0.167, 0.333, 0.389}, scaleDouble(3, projectedSepPotentials));
assertThat(scaleDouble(3, projectedSepPotentials)).containsExactly(0.111, 0.167, 0.333, 0.389);
}

@Test
Expand Down Expand Up @@ -202,7 +202,7 @@ public void testProjection4() {
p.project();

// remember it's been normalized, from 0.6 0.8 1.0 1.2
assertArray(new double[]{0.167, 0.222, 0.278, 0.333}, scaleDouble(3, projectedSepPotentials));
assertThat(scaleDouble(3, projectedSepPotentials)).containsExactly(0.167, 0.222, 0.278, 0.333);
}

}
62 changes: 26 additions & 36 deletions drools-beliefs/src/test/java/org/drools/beliefs/bayes/GlobalUpdateTest.java
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Original file line number Diff line number Diff line change
Expand Up @@ -20,11 +20,10 @@

import org.drools.beliefs.graph.Graph;
import org.drools.beliefs.graph.GraphNode;
import org.junit.Before;
import org.junit.Test;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;

import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;

import static org.assertj.core.api.Assertions.assertThat;
Expand Down Expand Up @@ -63,7 +62,7 @@ public class GlobalUpdateTest {
final List<String> messageResults = new ArrayList<String>();
final List<String> globalUpdateResults = new ArrayList<String>();

@Before
@BeforeEach
public void startUp() {
int i = 0;
List<JunctionTreeSeparator> list = new ArrayList<JunctionTreeSeparator>();
Expand Down Expand Up @@ -111,92 +110,92 @@ public void afterGlobalUpdate(CliqueState clique) {
@Test
public void testCollectFromRootClique() {
bayesInstance.collectEvidence(n0);
assertThat(messageResults).isEqualTo(asList("3:2", "4:2", "2:1", "7:6", "8:6", "6:5", "5:1", "1:0"));
assertThat(messageResults).containsExactly("3:2", "4:2", "2:1", "7:6", "8:6", "6:5", "5:1", "1:0");
}

@Test
public void testCollectFromMidTipClique() {
bayesInstance.collectEvidence(n4);
assertThat(messageResults).isEqualTo(asList("0:1", "7:6", "8:6", "6:5", "5:1", "1:2", "3:2", "2:4"));
assertThat(messageResults).containsExactly("0:1", "7:6", "8:6", "6:5", "5:1", "1:2", "3:2", "2:4");
}

@Test
public void testCollectFromEndTipClique() {
bayesInstance.collectEvidence(n7);
assertThat(messageResults).isEqualTo(asList("0:1", "3:2", "4:2", "2:1", "1:5", "5:6", "8:6", "6:7"));
assertThat(messageResults).containsExactly("0:1", "3:2", "4:2", "2:1", "1:5", "5:6", "8:6", "6:7");
}

@Test
public void testCollectFromMidClique() {
bayesInstance.collectEvidence(n5);
assertThat(messageResults).isEqualTo(asList("0:1", "3:2", "4:2", "2:1", "1:5", "7:6", "8:6", "6:5"));
assertThat(messageResults).containsExactly("0:1", "3:2", "4:2", "2:1", "1:5", "7:6", "8:6", "6:5");
}

@Test
public void testDistributeFromRootClique() {
bayesInstance.distributeEvidence(n0);
assertThat(messageResults).isEqualTo(asList("0:1", "1:2", "2:3", "2:4", "1:5", "5:6", "6:7", "6:8"));
assertThat(messageResults).containsExactly("0:1", "1:2", "2:3", "2:4", "1:5", "5:6", "6:7", "6:8");
}

@Test
public void testDistributeFromMidTipClique() {
bayesInstance.distributeEvidence(n4);
assertThat(messageResults).isEqualTo(asList("4:2", "2:1", "1:0", "1:5", "5:6", "6:7", "6:8", "2:3"));
assertThat(messageResults).containsExactly("4:2", "2:1", "1:0", "1:5", "5:6", "6:7", "6:8", "2:3");
}

@Test
public void testDistributeFromEndTipClique() {
bayesInstance.distributeEvidence(n7);
assertThat(messageResults).isEqualTo(asList("7:6", "6:5", "5:1", "1:0", "1:2", "2:3", "2:4", "6:8"));
assertThat(messageResults).containsExactly("7:6", "6:5", "5:1", "1:0", "1:2", "2:3", "2:4", "6:8");
}

@Test
public void testDistributeFromMidClique() {
bayesInstance.distributeEvidence(n5);
assertThat(messageResults).isEqualTo(asList("5:1", "1:0", "1:2", "2:3", "2:4", "5:6", "6:7", "6:8"));
assertThat(messageResults).containsExactly("5:1", "1:0", "1:2", "2:3", "2:4", "5:6", "6:7", "6:8");
}

@Test
public void testGlobalUpdateFromRootClique() {
bayesInstance.globalUpdate(n0);
assertThat(messageResults).isEqualTo(asList("3:2", "4:2", "2:1", "7:6", "8:6", "6:5", "5:1", "1:0", //n0
assertThat(messageResults).containsExactly("3:2", "4:2", "2:1", "7:6", "8:6", "6:5", "5:1", "1:0", //n0
"0:1", "1:2", "2:3", "2:4", "1:5", "5:6", "6:7", "6:8" //n0
));
assertThat(globalUpdateResults).isEqualTo(asList("0"));
);
assertThat(globalUpdateResults).containsExactly("0");
}

@Test
public void testGlobalUpdateFromMidTipClique() {
bayesInstance.globalUpdate(n4);
assertThat(messageResults).isEqualTo(asList("0:1", "7:6", "8:6", "6:5", "5:1", "1:2", "3:2", "2:4", //n4
assertThat(messageResults).containsExactly("0:1", "7:6", "8:6", "6:5", "5:1", "1:2", "3:2", "2:4", //n4
"4:2", "2:1", "1:0", "1:5", "5:6", "6:7", "6:8", "2:3" //n4
));
assertThat(globalUpdateResults).isEqualTo(asList("4"));
);
assertThat(globalUpdateResults).containsExactly("4");
}

@Test
public void testGlobalUpdateFromEndTipClique() {
bayesInstance.globalUpdate(n7);
assertThat(messageResults).isEqualTo(asList("0:1", "3:2", "4:2", "2:1", "1:5", "5:6", "8:6", "6:7", //n7
assertThat(messageResults).containsExactly("0:1", "3:2", "4:2", "2:1", "1:5", "5:6", "8:6", "6:7", //n7
"7:6", "6:5", "5:1", "1:0", "1:2", "2:3", "2:4", "6:8" //n7
));
assertThat(globalUpdateResults).isEqualTo(asList("7"));
);
assertThat(globalUpdateResults).containsExactly("7");
}

@Test
public void testGlobalUpdateFromMidClique() {
bayesInstance.globalUpdate(n5);
assertThat(messageResults).isEqualTo(asList("0:1", "3:2", "4:2", "2:1", "1:5", "7:6", "8:6", "6:5", //n5
assertThat(messageResults).containsExactly("0:1", "3:2", "4:2", "2:1", "1:5", "7:6", "8:6", "6:5", //n5
"5:1", "1:0", "1:2", "2:3", "2:4", "5:6", "6:7", "6:8" //n5
));
assertThat(globalUpdateResults).isEqualTo(asList("5"));
);
assertThat(globalUpdateResults).containsExactly("5");
}


@Test
public void testDistributeFromGlobalUpdate() {
bayesInstance.globalUpdate();
assertThat(messageResults).isEqualTo(asList("3:2", "4:2", "2:1", "7:6", "8:6", "6:5", "5:1", "1:0", //n0
assertThat(messageResults).containsExactly("3:2", "4:2", "2:1", "7:6", "8:6", "6:5", "5:1", "1:0", //n0
"0:1", "1:2", "2:3", "2:4", "1:5", "5:6", "6:7", "6:8" //n0
// "0:1", "3:2", "4:2", "2:1", "7:6", "8:6", "6:5", "5:1", //n1
// "1:0", "1:2", "2:3", "2:4", "1:5", "5:6", "6:7", "6:8", //n1
Expand All @@ -214,18 +213,9 @@ public void testDistributeFromGlobalUpdate() {
// "7:6", "6:5", "5:1", "1:0", "1:2", "2:3", "2:4", "6:8", //n7
// "0:1", "3:2", "4:2", "2:1", "1:5", "5:6", "7:6", "6:8", //n8
// "8:6", "6:5", "5:1", "1:0", "1:2", "2:3", "2:4", "6:7" //n8
));
);

// assertEquals( asList( "0", "1", "2", "3", "4", "5", "6", "7", "8"), globalUpdateResults);
assertThat(globalUpdateResults).isEqualTo(asList("0"));
}

public void testGlobalUpdate() {
bayesInstance.globalUpdate();
}

public List asList(String... items) {
return Arrays.asList(items);
assertThat(globalUpdateResults).containsExactly("0");
}

public void connectChildren(Graph<BayesVariable> graph, JunctionTreeClique parent, List list, JunctionTreeClique... children) {
Expand Down
14 changes: 2 additions & 12 deletions drools-beliefs/src/test/java/org/drools/beliefs/bayes/GraphTest.java
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Original file line number Diff line number Diff line change
Expand Up @@ -23,9 +23,7 @@
import org.drools.beliefs.graph.impl.EdgeImpl;
import org.drools.util.bitmask.OpenBitSet;

import java.util.ArrayList;
import java.util.Collection;
import java.util.List;

import static org.assertj.core.api.Assertions.assertThat;

Expand Down Expand Up @@ -56,11 +54,11 @@ public static boolean assertLinkedVertex(boolean[][] adjMatrix, int... ints) {
int id = ints[0];

Collection<Integer> adjVert = JunctionTreeBuilder.getAdjacentVertices(adjMatrix, id);
assertThat(adjVert.size()).isEqualTo(ints.length - 1);
assertThat(adjVert).hasSize(ints.length - 1);
for ( int i = 1; i < ints.length; i++ ) {
assertThat(adjMatrix[id][ints[i]]).as("link was not true " + id + ", " + i).isTrue();
assertThat(adjMatrix[ints[i]][id]).as("link was not true " + i + ", " + id).isTrue();
assertThat(adjVert.contains(ints[i])).as("does not contain " + ints[i]).isTrue();
assertThat(adjVert).as("does not contain " + ints[i]).contains(ints[i]);
}

return false;
Expand All @@ -75,14 +73,6 @@ public static GraphNode<BayesVariable> addNode(Graph<BayesVariable> graph) {



public static List asList(int[] array) {
List list = new ArrayList(array.length);
for (int i = 0; i < array.length; i++) {
list.add(array[i]);
}
return list;
}

public static OpenBitSet bitSet(String s) {
OpenBitSet bitSet = new OpenBitSet( );
bitSet.setBits(new long[] { Long.valueOf(s, 2) });
Expand Down
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