Merge pull request #32 from khanlab/fixROI

fix for removing ROI*.nii.gz files
khanlab · May 9, 2022 · 77bae7f · 77bae7f
2 parents 1e1d74d + 86d2ca2
commit 77bae7f
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/tar2bids b/tar2bids
@@ -468,6 +468,8 @@ done
 echo "  Adding default .bidsignore file..."
 cp -v $execpath/etc/bidsignore $output_dir/.bidsignore
 
+echo "  Removing _ROI#.nii.gz files (unused scale bars from qMRI)..."
+rm -vf $output_dir/sub*/*/*ROI[0-9].nii.gz $output_dir/sub*/ses*/*ROI[0-9].nii.gz 2> /dev/null
 
 echo "  Running bids-validator..."
 bids-validator $output_dir | tee  $validator_out