Remove .bval and .bvec files from anat

New CFMM MP2RAGE sequence contains (0019, 100c) [B_value] in the DICOM header, causing dcm2niix to interpret these images as diffusion and generating a .bval and .bvec file.
khanlab · Mar 1, 2024 · 1144045 · 1144045
1 parent 9310e5c
commit 1144045
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/tar2bids b/tar2bids
@@ -465,6 +465,9 @@ rm -f $output_dir/*/*_scans.tsv $output_dir/*/*/*_scans.tsv
 rm -f $output_dir/*/fmap/*.bval $output_dir/*/*/fmap/*.bval
 rm -f $output_dir/*/fmap/*.bvec $output_dir/*/*/fmap/*.bvec
 
+# remove .bval and .bvec files from anat (dcm2niix picking up header suggesting MP2RAGE is diffusion)
+rm -f $output_dir/*/anat/*.bval $output_dir/*/*/anat/*.bval
+rm -f $output_dir/*/anat/*.bvec $output_dir/*/*/anat/*.bvec
 
 if [ "$do_deface" = "1" ]
 then