Adding argument for metadata indexing by generate_inputs

[myousif9]

Adding argument for metadata indexing with pybids in generate_inputs function which allows metadata to be accessible in BIDSLayout returned from <generate_inputs_return>.layout.

[pvandyken]

The repo will need to be formatted with ruff, poetry run poe fix should do the trick.

Otherwise, looks good

[kaitj]

Looks good to me pending running the formatting on this. Also wondering about the additional imports - I don't see where it gets used in the diff.

[pvandyken]

@myousif9 feel free to add an ignore comment to the ruff error you're getting

[myousif9]

Ran ruff formatting.

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (5acabfd) 91.60% compared to head (f519596) 91.60%.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #367   +/-   ##
=======================================
  Coverage   91.60%   91.60%           
=======================================
  Files          39       39           
  Lines        1727     1727           
=======================================
  Hits         1582     1582           
  Misses        145      145           

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[myousif9]

Added ignore comment for ruff error, synced with main branch and now passes all checks.