Overhaul snakebids create

.github/workflows/test.yml

@@ -110,6 +110,33 @@ jobs:
       if: steps.setup-python.outputs.cache-hit != 'true'
       run: poetry install --no-interaction --no-root --no-ansi
 
+    # Build docker container needed for test
+    - name: Set up QEMU
+      uses: docker/setup-qemu-action@v3
+    - name: Set up Docker Buildx
+      uses: docker/setup-buildx-action@v3
+    - name: Cache Template Testing Containers
+      uses: actions/cache@v3
+      with:
+        path: container-test-template-cache
+        key: ${{ runner.os }}-test-template-cache-${{ hashFiles('containers/test-template/**') }}-${{ steps.setup-python.outputs.python-version }}
+    - name: Inject container-test-template-cache into docker
+      uses: reproducible-containers/[email protected]
+      with:
+        cache-source: container-test-template-cache
+    - name: Build Docker container for cache
+      uses: docker/build-push-action@v5
+      with:
+        context: containers/test-template
+        cache-from: type=gha
+        cache-to: type=gha,mode=max
+        push: false
+        load: false
+        tags: snakebids/test-template:${{ steps.setup-python.outputs.python-version }}
+        platforms: linux/amd64
+        build-args: |
+          PYTHON_VERSION=${{ steps.setup-python.outputs.python-version }}
+
   test:
     runs-on: ubuntu-latest
     needs: [ 'build-cache-env'  ]
@@ -153,6 +180,35 @@ jobs:
     - name: Install dependencies
       if: steps.setup-python.outputs.cache-hit != 'true'
       run: poetry install --no-interaction --no-root --no-ansi
+
+
+    # Build docker container needed for test
+    - name: Set up QEMU
+      uses: docker/setup-qemu-action@v3
+    - name: Set up Docker Buildx
+      uses: docker/setup-buildx-action@v3
+    - name: Cache Template Testing Containers
+      uses: actions/cache@v3
+      with:
+        path: container-test-template-cache
+        key: ${{ runner.os }}-test-template-cache-${{ hashFiles('containers/test-template/**') }}-${{ steps.setup-python.outputs.python-version }}
+    - name: Inject container-test-template-cache into docker
+      uses: reproducible-containers/[email protected]
+      with:
+        cache-source: container-test-template-cache
+    - name: Build Docker container for cache
+      uses: docker/build-push-action@v5
+      with:
+        context: containers/test-template
+        cache-from: type=gha
+        cache-to: type=gha,mode=max
+        push: false
+        load: true
+        tags: snakebids/test-template:${{ steps.setup-python.outputs.python-version }}
+        platforms: linux/amd64
+        build-args: |
+          PYTHON_VERSION=${{ steps.setup-python.outputs.python-version }}
+
     - name: Install library
       run: poetry install --no-interaction --no-ansi
 

containers/test-template/Dockerfile

@@ -0,0 +1,21 @@
+ARG PYTHON_VERSION=3.11
+FROM python:${PYTHON_VERSION}-slim
+
+# Install and uninstall snakebids to cache it and it's dependences
+RUN apt-get update && apt-get install -y gcc && \
+    rm -rf /var/lib/apt/lists/* && \
+    python -m pip install pipx && \
+    pipx install poetry && \
+    pipx install hatch && \
+    pipx install pdm && \
+    mkdir prebuild && \
+    cd prebuild && \
+    pip wheel snakebids && \
+    cd .. && \
+    rm -rf prebuild
+
+COPY ./test-template.sh /run/test-template.sh
+ENV PATH="/root/.local/bin:$PATH"
+
+WORKDIR /work
+ENTRYPOINT [ "/run/test-template.sh" ]

containers/test-template/test-template.sh

@@ -0,0 +1,32 @@
+#!/bin/sh
+
+set -eu
+
+method="$1"
+script_name="$2"
+
+cp -r /app/* /work
+script="'${script_name}' tests/data tests/result participant -c1 --skip-bids-validation"
+case "$method" in
+    "setuptools" )
+        python -m venv .venv
+        .venv/bin/python -m pip install .
+        PATH=".venv/bin:$PATH" eval "$script"
+        ;;
+    "poetry" )
+        poetry install
+        eval "poetry run $script"
+        ;;
+    "hatch" )
+        hatch env create
+        eval "hatch env run -- $script"
+        ;;
+    "pdm" )
+        pdm install
+        eval "pdm run $script"
+        ;;
+    * )
+        >&2 echo "Invalid method"
+        exit 1
+        ;;
+esac