Add test coverage

khanlab · Dec 16, 2023 · d3d0758 · d3d0758
1 parent 1aefca5
commit d3d0758
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Showing 3 changed files with 100 additions and 11 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -76,9 +76,16 @@ jobs:
           HYPOTHESIS_PROFILE: pr
         run: >-
           poetry run pytest -n auto --splits 5 --group ${{ matrix.split }}
+          --cov=snakebids
           --doctest-modules --ignore=docs
           --ignore=snakebids/project_template --benchmark-disable
 
+      - name: Upload coverage reports to Codecov
+        uses: codecov/codecov-action@v3
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+
   deployment_on_base:
     runs-on: ubuntu-latest
     if: ${{ contains(github.event_name, 'pull_request') }}

diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -86,6 +86,7 @@ pytest-xdist = "^3.3.1"
 pytest-split = "^0.8.1"
 tomli = "^2.0.1"
 requests-mock = "^1.11.0"
+pytest-cov = "^4.1.0"
 
 [tool.poetry.scripts]
 snakebids = "snakebids.admin:main"
@@ -123,6 +124,12 @@ markers = [
     "docker: marks tests as requiring docker (deselect with '-m \"not docker\"')",
 ]
 
+[tool.coverage.run]
+omit = [
+    "snakebids/project_template",
+    "snakebids/tests",
+]
+
 [tool.isort]
 profile = "black"
 multi_line_output = 3