Fix broken references

docs/bids_app/config.md

@@ -11,9 +11,9 @@ Config Variables
 
 A dictionary that describes each type of input you want to grab from an input BIDS dataset. Snakebids will parse your dataset with {func}`generate_inputs() <snakebids.generate_inputs>`, converting each input type into a {class}`BidsComponent <snakebids.BidsComponent>`. The value of each item should be a dictionary with keys ``filters`` and ``wildcards``.
 
-The value of ``filters`` should be a dictionary where each key corresponds to a BIDS entity, and the value specifies which values of that entity should be grabbed. The dictionary for each input is sent to the [PyBIDS' get() function ](pybids:bids.layout.BIDSLayout). `filters` can be set according to a few different formats:
+The value of ``filters`` should be a dictionary where each key corresponds to a BIDS entity, and the value specifies which values of that entity should be grabbed. The dictionary for each input is sent to the [PyBIDS' get() function ](#bids.layout.BIDSLayout). `filters` can be set according to a few different formats:
 
-* [string](python:str): specifies an exact value for the entity. In the following example:
+* [string](#str): specifies an exact value for the entity. In the following example:
   ```yaml
   pybids_inputs:
     bold:
@@ -29,7 +29,7 @@ The value of ``filters`` should be a dictionary where each key corresponds to a
   sub-xxx/.../func/ent1-xxx_ent2-xxx_..._bold.nii.gz
   ```
 
-* [boolean](python:bool): constrains presence or absence of the entity without restricting its value. `False` requires that the entity be **absent**, while `True` requires that the  entity be **present**, regardless of value.
+* [boolean](#bool): constrains presence or absence of the entity without restricting its value. `False` requires that the entity be **absent**, while `True` requires that the  entity be **present**, regardless of value.
   ```yaml
   pybids_inputs:
     derivs: