Eliminate pytest warnings

pyproject.toml

@@ -174,6 +174,7 @@ cmd = """
 [tool.pytest.ini_options]
 markers = [
     "docker: marks tests as requiring docker (deselect with '-m \"not docker\"')",
+    "disable_fakefs: disable the fake filesystem in a hypothesis test"
 ]
 
 [tool.coverage.run]

snakebids/tests/helpers.py

@@ -25,9 +25,10 @@
 from hypothesis import HealthCheck, example, settings
 from typing_extensions import ParamSpec
 
-from snakebids import bids
+from snakebids import bids_factory
 from snakebids.core.datasets import BidsDataset
 from snakebids.core.input_generation import generate_inputs
+from snakebids.paths import specs
 from snakebids.types import InputsConfig, ZipList, ZipListLike
 from snakebids.utils.containers import MultiSelectDict, UserDictPy38
 from snakebids.utils.utils import BidsEntity
@@ -103,6 +104,7 @@ def get_bids_path(entities: Iterable[str | BidsEntity], **extras: str) -> str:
     def get_tag(entity: BidsEntity) -> tuple[str, str]:
         return entity.wildcard, f"{{{entity.wildcard}}}"
 
+    bids = bids_factory(specs.latest())
     return bids(
         **dict(get_tag(BidsEntity(entity)) for entity in sorted(entities)),
         **{BidsEntity(entity).wildcard: value for entity, value in extras.items()},

snakebids/tests/test_generate_inputs.py

@@ -130,15 +130,23 @@ def test_second_return_never_none(
         pybidsdb_reset: bool | None,
         pybids_database_reset: bool | None,
     ):
-        assert (
-            _normalize_database_args(
-                None,
-                pybidsdb_reset,
-                None,
-                pybids_database_reset,
-            )[1]
-            is not None
-        )
+        with warnings.catch_warnings():
+            warnings.filterwarnings(
+                "ignore",
+                message=r"The parameter `pybids_reset_database` in generate_inputs\(\) "
+                "is deprecated and will be removed in the next release. To reset the "
+                "pybids database, use the `pybidsdb_reset` parameter instead",
+                category=UserWarning,
+            )
+            assert (
+                _normalize_database_args(
+                    None,
+                    pybidsdb_reset,
+                    None,
+                    pybids_database_reset,
+                )[1]
+                is not None
+            )
 
     @given(pybidsdb_dir=st.text().filter(_not_deprecated))
     def test_deprecated_dir_raises_warning(self, pybidsdb_dir: str):