Weekly testing and recalibration of test timings #23
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| name: Weekly testing and recalibration of test timings | |
| on: | |
| schedule: | |
| - cron: "5 3 * * 2" | |
| jobs: | |
| calibrate-timings: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| pull-requests: write | |
| contents: write | |
| steps: | |
| - name: install | |
| uses: khanlab/actions/.github/actions/[email protected] | |
| id: setup | |
| with: | |
| python-version: "3.8" | |
| install-library: true | |
| - name: build docker test container | |
| uses: ./.github/actions/build-test-container | |
| with: | |
| python-version: ${{ steps.setup.outputs.python-version }} | |
| load: true | |
| - name: Count current number of tests | |
| id: count | |
| run: | | |
| echo "NUM=$( | |
| poetry run pytest --collect-only -q | head -n -2 | wc -l | |
| )" >> "$GITHUB_OUTPUT" | |
| - name: Count number of timed tests | |
| id: timed-count | |
| run: | | |
| echo "NUM=$(jq 'keys | length' .test_durations)" >> "$GITHUB_OUTPUT" | |
| - name: Test with pytest | |
| if: ${{ steps.count.outputs.NUM }} != ${{ steps.timed-count.outputs.NUM }} | |
| env: | |
| HYPOTHESIS_PROFILE: pr | |
| run: >- | |
| poetry run pytest -n auto --store-durations | |
| --doctest-modules --ignore=docs | |
| --ignore=snakebids/project_template --benchmark-disable | |
| - name: Check if there are changes | |
| id: changes | |
| run: | | |
| echo "changed=$(git diff-files --quiet && echo 0 || echo 1)" >> "$GITHUB_OUTPUT" | |
| - name: debug outputs | |
| run: | | |
| echo "Current # tests: ${{ steps.count.outputs.NUM }}" | |
| echo "Current # timed tests: ${{ steps.timed-count.outputs.NUM }}" | |
| echo "Changes?: ${{ steps.changes.outputs.changed }}" | |
| - name: Create PR | |
| if: steps.changes.outputs.changed == 1 | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| commit-message: Update test timings file | |
| branch: maint/update-test-timings | |
| title: Merge updated test timings | |
| labels: maintenance | |
| body: | | |
| The number of tests has changed since the last generated test-timings | |
| file. This PR contains an automatically regenerated file. | |
| build-cache-env: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: khanlab/actions/.github/actions/[email protected] | |
| id: setup | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache-key: pypi | |
| install-deps-only: dev | |
| install-library: false | |
| - name: build docker test container | |
| uses: ./.github/actions/build-test-container | |
| with: | |
| python-version: ${{ steps.setup.outputs.python-version }} | |
| load: true | |
| - name: install lib | |
| run: poetry run pip install . | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: [ 'build-cache-env' ] | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| split: ['1', '2', '3', '4', '5'] | |
| fail-fast: false | |
| steps: | |
| - uses: khanlab/actions/.github/actions/[email protected] | |
| id: setup | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache-key: nightly | |
| install-deps-only: dev | |
| install-library: false | |
| - name: install lib | |
| run: poetry run pip install . | |
| - name: build docker test container | |
| uses: ./.github/actions/build-test-container | |
| with: | |
| python-version: ${{ steps.setup.outputs.python-version }} | |
| load: true | |
| - name: Test with pytest | |
| env: | |
| HYPOTHESIS_PROFILE: pr | |
| run: >- | |
| poetry run pytest -n auto --splits 5 --group ${{ matrix.split }} | |
| --doctest-modules --ignore=docs | |
| --ignore=snakebids/project_template --benchmark-disable |