Dep updates and expansion of ruff CI #838
Workflow file for this run
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Test workflow | |
on: | |
push: | |
branches: | |
- '*' | |
- '!push-action/*' | |
pull_request: | |
branches: | |
- '*' | |
- '!push-action/*' | |
jobs: | |
quality: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Clone repo | |
uses: actions/checkout@v3 | |
# install & configure poetry | |
- name: Cache Poetry Installation | |
id: cached-poetry | |
uses: actions/cache@v3 | |
with: | |
path: ~/.local | |
key: ${{ runner.os }}-poetry-${{ github.event.pull_request.id || github.event.after }} | |
- name: Install Poetry | |
uses: snok/install-poetry@v1 | |
if: steps.cached-poetry.outputs.cache-hit != 'true' | |
with: | |
virtualenvs-create: true | |
virtualenvs-in-project: true | |
- name: Setup Python | |
id: setup-python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.11' | |
cache: 'poetry' | |
- name: Store Pip Cache | |
uses: actions/cache@v3 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ steps.setup-python.outputs.python-version }} | |
restore-keys: ${{ runner.os }}-pip-${{ steps.setup-python.outputs.python-version }} | |
# install dependencies | |
- name: Install dependencies | |
if: steps.setup-python.outputs.cache-hit != 'true' | |
run: poetry install --no-interaction --no-ansi --no-root | |
- name: Install library | |
run: poetry install --no-interaction --no-ansi | |
# run python style checks | |
- name: Poetry Lock Check | |
run: poetry check --lock | |
- name: Formatting | |
run: poetry run ruff format snakebids --check | |
- name: Linting | |
run: poetry run ruff check snakebids | |
- name: pyright | |
run: poetry run pyright snakebids | |
build-cache-env: | |
runs-on: ubuntu-latest | |
needs: [ 'quality' ] | |
strategy: | |
matrix: | |
python-version: ['3.8', '3.9', '3.10', '3.11'] | |
steps: | |
- uses: actions/checkout@v3 | |
# install & configure poetry | |
- name: Cache Poetry Installation | |
id: cached-poetry | |
uses: actions/cache@v3 | |
with: | |
path: ~/.local | |
key: ${{ runner.os }}-poetry-${{ github.event.pull_request.id || github.event.after }} | |
- name: Install Poetry | |
if: steps.cached-poetry.outputs.cache-hit != 'true' | |
uses: snok/install-poetry@v1 | |
with: | |
virtualenvs-create: true | |
virtualenvs-in-project: true | |
- name: Set up Python ${{ matrix.python-version }} | |
id: setup-python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'poetry' | |
- name: Store pip cache | |
uses: actions/cache@v3 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ steps.setup-python.outputs.python-version }} | |
restore-keys: | | |
${{ runner.os }}-pip-${{ steps.setup-python.outputs.python-version }} | |
${{ runner.os }}-pip- | |
# install dependencies if cache does not exist | |
- name: Install dependencies | |
if: steps.setup-python.outputs.cache-hit != 'true' | |
run: poetry install --no-interaction --no-root --no-ansi | |
# Build docker container needed for test | |
- name: Set up QEMU | |
uses: docker/setup-qemu-action@v3 | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v3 | |
- name: Cache Template Testing Containers | |
uses: actions/cache@v3 | |
with: | |
path: container-test-template-cache | |
key: ${{ runner.os }}-test-template-cache-${{ hashFiles('containers/test-template/**') }}-${{ steps.setup-python.outputs.python-version }} | |
- name: Inject container-test-template-cache into docker | |
uses: reproducible-containers/[email protected] | |
with: | |
cache-source: container-test-template-cache | |
- name: Build Docker container for cache | |
uses: docker/build-push-action@v5 | |
with: | |
context: containers/test-template | |
cache-from: type=gha | |
cache-to: type=gha,mode=max | |
push: false | |
load: false | |
tags: snakebids/test-template:${{ steps.setup-python.outputs.python-version }} | |
platforms: linux/amd64 | |
build-args: | | |
PYTHON_VERSION=${{ steps.setup-python.outputs.python-version }} | |
test: | |
runs-on: ubuntu-latest | |
needs: [ 'build-cache-env' ] | |
strategy: | |
matrix: | |
python-version: ['3.8', '3.9', '3.10', '3.11'] | |
split: ['1', '2', '3', '4', '5'] | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v3 | |
# install & configure poetry | |
- name: Cache Poetry Installation | |
id: cached-poetry | |
uses: actions/cache@v3 | |
with: | |
path: ~/.local | |
key: ${{ runner.os }}-poetry-${{ github.event.pull_request.id || github.event.after }} | |
- name: Install Poetry | |
uses: snok/install-poetry@v1 | |
if: steps.cached-poetry.outputs.cache-hit != 'true' | |
with: | |
# Ensure this specification is removed when py37 support is dropped | |
version: 1.5.1 | |
virtualenvs-create: true | |
virtualenvs-in-project: true | |
- name: Set up Python ${{ matrix.python-version }} | |
id: setup-python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: poetry | |
- uses: actions/cache@v3 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ steps.setup-python.outputs.python-version }} | |
restore-keys: | | |
${{ runner.os }}-pip-${{ steps.setup-python.outputs.python-version }} | |
${{ runner.os }}-pip- | |
# install dependencies | |
- name: Install dependencies | |
if: steps.setup-python.outputs.cache-hit != 'true' | |
run: poetry install --no-interaction --no-root --no-ansi | |
# Build docker container needed for test | |
- name: Set up QEMU | |
uses: docker/setup-qemu-action@v3 | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v3 | |
- name: Cache Template Testing Containers | |
uses: actions/cache@v3 | |
with: | |
path: container-test-template-cache | |
key: ${{ runner.os }}-test-template-cache-${{ hashFiles('containers/test-template/**') }}-${{ steps.setup-python.outputs.python-version }} | |
- name: Inject container-test-template-cache into docker | |
uses: reproducible-containers/[email protected] | |
with: | |
cache-source: container-test-template-cache | |
- name: Build Docker container for cache | |
uses: docker/build-push-action@v5 | |
with: | |
context: containers/test-template | |
cache-from: type=gha | |
cache-to: type=gha,mode=max | |
push: false | |
load: true | |
tags: snakebids/test-template:${{ steps.setup-python.outputs.python-version }} | |
platforms: linux/amd64 | |
build-args: | | |
PYTHON_VERSION=${{ steps.setup-python.outputs.python-version }} | |
- name: Install library | |
run: poetry install --no-interaction --no-ansi | |
- name: Test with pytest | |
env: | |
HYPOTHESIS_PROFILE: pr | |
run: >- | |
poetry run pytest -n auto --splits 5 --group ${{ matrix.split }} | |
--doctest-modules --ignore=docs | |
--ignore=snakebids/project_template --benchmark-disable | |
deployment_on_base: | |
runs-on: ubuntu-latest | |
if: ${{ contains(github.event_name, 'pull_request') }} | |
steps: | |
- name: Check for previous deployment on base | |
run: | | |
[[ $( | |
curl https://api.github.com/repos/${{ github.repository }}/releases | | |
jq '.[].target_commitish == "${{ github.event.pull_request.base.ref }}"' | | |
grep true | wc -l | |
) != 0 ]] |