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Overhaul snakebids create #786

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Overhaul snakebids create

Overhaul snakebids create #786

Workflow file for this run

.github/workflows/test.yml at 3353886
# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Test workflow
on:
push:
branches:
- '*'
- '!push-action/*'
pull_request:
branches:
- '*'
- '!push-action/*'
jobs:
quality:
runs-on: ubuntu-latest
steps:
- name: Clone repo
uses: actions/checkout@v3
- name: Setup Python
uses: actions/setup-python@v4
with:
python-version: '3.11'
- uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-3.11
restore-keys: ${{ runner.os }}-pip-3.11
#----------------------------------------------
# ----- install & configure poetry -----
#----------------------------------------------
- name: Install Poetry
uses: snok/install-poetry@v1
with:
virtualenvs-create: true
virtualenvs-in-project: true
#----------------------------------------------
# load cached venv if cache exists
#----------------------------------------------
- name: Load cached venv
id: cached-poetry-dependencies
uses: actions/cache@v3
with:
path: .venv
key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}-3.11
#----------------------------------------------
# install dependencies if cache does not exist
#----------------------------------------------
- name: Install dependencies
if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
run: poetry install --no-interaction --no-ansi --no-root
#----------------------------------------------
# install your root project, if required
#----------------------------------------------
- name: Install library
run: poetry install --no-interaction --no-ansi
#----------------------------------------------
# run python style checks
#----------------------------------------------
- name: Poetry Lock Check
run: poetry check --lock
- name: isort
run: poetry run isort snakebids -c
- name: Black
run: poetry run black snakebids --check
- name: pyright
run: poetry run pyright snakebids
- name: ruff
run: poetry run ruff snakebids
test:
runs-on: ubuntu-latest
needs: [ 'quality' ]
strategy:
matrix:
python-version: ['3.8', '3.9', '3.10', '3.11']
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ matrix.python-version }}
restore-keys: ${{ runner.os }}-pip-${{ matrix.python-version }}
#----------------------------------------------
# ----- install & configure poetry -----
#----------------------------------------------
- name: Install Poetry
uses: snok/install-poetry@v1
with:
virtualenvs-create: true
virtualenvs-in-project: true
#----------------------------------------------
# load cached venv if cache exists
#----------------------------------------------
- name: Load cached venv
id: cached-poetry-dependencies
uses: actions/cache@v3
with:
path: .venv
key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}-${{ matrix.python-version }}
#----------------------------------------------
# install dependencies if cache does not exist
#----------------------------------------------
- name: Install dependencies
if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
run: poetry install --no-interaction --no-root --no-ansi
#---------------------------------------------
# Build docker container needed for test
#---------------------------------------------
- name: Set up QEMU
uses: docker/setup-qemu-action@v3
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
- name: Cache Template Testing Containers
uses: actions/cache@v3
with:
path: container-test-template-cache
key: ${{ runner.os }}-test-template-cache-${{ hashFiles('containers/test-template/**') }}-${{ matrix.python-version }}
- name: Inject container-test-template-cache into docker
uses: reproducible-containers/[email protected]
with:
cache-source: container-test-template-cache
- name: Build and push
uses: docker/build-push-action@v5
with:
context: containers/test-template
cache-from: type=gha
cache-to: type=gha,mode=max
push: false
load: true
tags: snakebids/test-template:${{ matrix.python-version }}
platforms: linux/amd64
build-args: |
PYTHON_VERSION=${{ matrix.python-version }}
#----------------------------------------------
# install your root project, if required
#----------------------------------------------
- name: Install library
run: poetry install --no-interaction --no-ansi
- name: Test with pytest
env:
HYPOTHESIS_PROFILE: pr
run: |
poetry run pytest --doctest-modules --ignore=docs --ignore=snakebids/project_template --benchmark-disable
deployment_on_base:
runs-on: ubuntu-latest
if: ${{ contains(github.event_name, 'pull_request') }}
steps:
- name: Check for previous deployment on base
run: |
[[ $(
curl https://api.github.com/repos/${{ github.repository }}/releases |
jq '.[].target_commitish == "${{ github.event.pull_request.base.ref }}"' |
grep true | wc -l
) != 0 ]]