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revert nighres to an older commit, fix docker build (#7)
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akhanf authored May 4, 2023
1 parent a6eb7e3 commit 13ca403
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -44,7 +44,7 @@ ENV JAVA_HOME /usr/lib/jvm/java-11-openjdk-amd64/
ENV JCC_JDK /usr/lib/jvm/java-11-openjdk-amd64/

RUN cd /tmp/JCC-3.10 && python setup.py install && \
cd /opt && git clone http://github.com/nighres/nighres && cd /opt/nighres && ./build.sh && cd /opt/nighres && pip install . && \
cd /opt && git clone http://github.com/nighres/nighres && cd /opt/nighres && git checkout 1901ce9a9afdfad8e2d66ec09600fbfb9fa0151d && ./build.sh && cd /opt/nighres && pip install . && \
rm -rf /opt/nighres /tmp/JCC-3.10 /tmp/JCC-3.10.tar.gz

ENV LD_LIBRARY_PATH /opt/itksnap/lib/:/opt/niftyreg-1.3.9/lib:/opt/workbench/libs_linux64:/opt/workbench/libs_linux64_software_opengl:${LD_LIBRARY_PATH}
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