minor fix

khanlab · Feb 21, 2024 · a708c32 · a708c32
1 parent 9771ce3
commit a708c32
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/.dryrun_test_all.sh b/.dryrun_test_all.sh
@@ -10,8 +10,8 @@ hippunfold test_data/bids_hippb500 test_out participant -np --modality hippb500
 hippunfold test_data/bids_T1w_longitudinal test_out participant -np --modality T1w
 hippunfold test_data/bids_singleT2w_longitudinal test_out participant -np --modality T2w
 hippunfold test_data/bids_segT2w test_out participant -np --modality segT2w
-hippunfold - test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg/sub-{subject}_hemi-{hemi}_dseg.nii.gz
-hippunfold - test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg_1hemi/sub-{subject}_hemi-{hemi}_dseg.nii.gz --hemi L
+hippunfold . test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg/sub-{subject}_hemi-{hemi}_dseg.nii.gz
+hippunfold . test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg_1hemi/sub-{subject}_hemi-{hemi}_dseg.nii.gz --hemi L
 hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --t1_reg_template
 hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --output_space T1w
 hippunfold test_data/bids_T1w test_out participant -np --modality T1w --use-template-seg
diff --git a/hippunfold/workflow/rules/preproc_t1.smk b/hippunfold/workflow/rules/preproc_t1.smk
@@ -297,7 +297,7 @@ rule warp_t1_to_corobl_crop:
             root=work,
             datatype="anat",
             **config["subj_wildcards"],
-            suffix="{modality}.nii.gz",
+            suffix="T1w.nii.gz",
             space="corobl",
             desc="preproc",
             hemi="{hemi,L|R}"