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Jordan DeKraker - B. Bernhardt Lab committed Mar 20, 2024
1 parent 95cf1be commit 0aa2125
Showing 1 changed file with 6 additions and 1 deletion.
7 changes: 6 additions & 1 deletion hippunfold/workflow/rules/preproc_t2.smk
Original file line number Diff line number Diff line change
Expand Up @@ -263,7 +263,12 @@ def get_inputs_compose_t2_xfm_corobl(wildcards):
)
else:
t2_to_t1 = Path(workflow.basedir).parent / config["xfm_identity_itk"]
to_corobl = Path(download_dir) / "template" / config["template"] / config["template_files"][config["template"]]["xfm_corobl"]
to_corobl = (
Path(download_dir)
/ "template"
/ config["template"]
/ config["template_files"][config["template"]]["xfm_corobl"]
)
return {"t2_to_t1": t2_to_t1, "to_corobl": to_corobl}


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