action fix

khanlab · Feb 14, 2024 · 9520207 · 9520207
1 parent 9d9c68c
commit 9520207
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Showing 2 changed files with 9 additions and 1 deletion.
diff --git a/.github/snakebids_action_requirements.txt b/.github/snakebids_action_requirements.txt
@@ -0,0 +1,6 @@
+snakebids @ git+https://github.com/khanlab/snakebids#8acbd9f
+typing-extensions = ">=3.10.0"
+attrs = ">=21.2.0"
+boutiques = "^0.5.25"
+more-itertools = ">=8"
+pvandyken-deprecated = "0.0.4" 
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -28,7 +28,7 @@ jobs:
       uses: snakemake/[email protected]
       with:
         directory: .
-        stagein: "pip install --no-deps -r ../.github/snakemake_action_requirements.txt"
+        stagein: "pip install --no-deps -r .github/snakemake_action_requirements.txt"
         snakefile: workflow/Snakefile
         args: "--lint"
 
@@ -44,12 +44,14 @@ jobs:
       uses: snakemake/[email protected]
       with:
         directory: .test
+        stagein: "pip install --no-deps -r .github/snakemake_action_requirements.txt"
         snakefile: workflow/Snakefile
         args: "--sdm apptainer --show-failed-logs --cores 1 --all-temp"
 
     - name: Test report
       uses: snakemake/[email protected]
       with:
         directory: .test
+        stagein: "pip install --no-deps -r .github/snakemake_action_requirements.txt"
         snakefile: workflow/Snakefile
         args: "--report report.zip"