fix for tar inputs (#9)

bug introduced when renaming rules
khanlab · Feb 23, 2024 · 73c1427 · 73c1427
1 parent 43b5760
commit 73c1427
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diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -56,7 +56,7 @@ def get_input_dataset(wildcards):
 
     elif tarfile.is_tarfile(dataset_path):
         # dataset was a tar file, so point to the extracted folder
-        return rules.get_dataset.output.ome_dir.format(**wildcards)
+        return rules.extract_dataset.output.ome_dir.format(**wildcards)
 
     else:
         print(f"unsupported input: {dataset_path}")

diff --git a/workflow/rules/import.smk b/workflow/rules/import.smk
@@ -24,7 +24,7 @@ rule extract_dataset:
         bids(
             root="logs",
             subject="{subject}",
-            datatype="get_dataset",
+            datatype="extract_dataset",
             sample="{sample}",
             acq="{acq}",
             desc="raw",