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Update main.yml #12

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Update main.yml

Update main.yml #12

Workflow file for this run

.github/workflows/main.yml at 591bf99
name: Tests
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
Formatting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Formatting
uses: github/super-linter@v4
env:
VALIDATE_ALL_CODEBASE: false
DEFAULT_BRANCH: main
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
VALIDATE_SNAKEMAKE_SNAKEFMT: true
Linting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Lint workflow
uses: snakemake/[email protected]
with:
directory: .
stagein: "pip install --no-deps snakebids"
snakefile: workflow/Snakefile
args: "--lint"
Testing:
runs-on: ubuntu-latest
needs:
- Linting
- Formatting
steps:
- uses: actions/checkout@v2
- name: Test workflow
uses: snakemake/[email protected]
with:
directory: .test
snakefile: workflow/Snakefile
args: "--sdm apptainer --show-failed-logs --cores 1 --all-temp"
- name: Test report
uses: snakemake/[email protected]
with:
directory: .test
snakefile: workflow/Snakefile
args: "--report report.zip"