fixes

khanlab · Feb 10, 2024 · 186b831 · 186b831
1 parent 0b17c39
commit 186b831
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diff --git a/Dockerfile b/Dockerfile
@@ -64,5 +64,9 @@ RUN ImageJ-linux64 --update  add-update-site BigStitcher https://sites.imagej.ne
  && ImageJ-linux64  --update  update \
  && ImageJ-linux64  --update  list 
 
+#install pythondeps (including ome-zarr separately, having issues with including it in pyproject)
+COPY . /opt/pythondeps
+RUN pip install --no-cache-dir /opt/pythondeps && pip install --no-cache-dir ome-zarr
+
 
 ENTRYPOINT ["/bin/bash"]
diff --git a/README.md b/README.md
@@ -0,0 +1,3 @@
+# SPIMprep_deps
+
+Container for SPIMprep dependencies (Fiji, bigstitcher, python)
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@
		# SPIMprep_deps

		Container for SPIMprep dependencies (Fiji, bigstitcher, python)