GitHub - kesshijordan/Kesh_Autoseg_Tools: This is a set of tools associated with automatically segmenting tractography datasets using a combination of two complementary approaches: streamlines included in a fascicle model are identified based on 1) anatomical connectivity priors based on Freesurfer-derived regions of interest (ROIs) in the subject’s native space and 2) shape priors based on 3D streamline bundle atlases applied using Recobundles. The code for a methodology generating bundle atlases is also included, as well as useful command-line helper scripts such as identification of outliers, filtering, and merging functions.

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This is a set of tools associated with automatically segmenting tractography datasets using a combination of two complementary approaches: streamlines included in a fascicle model are identified based on 1) anatomical connectivity priors based on Freesurfer-derived regions of interest (ROIs) in the subject’s native space and 2) shape priors base…

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Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
CL_calc_conf_Xmm.py		CL_calc_conf_Xmm.py
CL_filt_conf_Xcci.py		CL_filt_conf_Xcci.py
CL_filt_length_Xmm.py		CL_filt_length_Xmm.py
CL_hdr_newAPI.py		CL_hdr_newAPI.py
CL_merge_trks.py		CL_merge_trks.py
Kesh_Templates_newAPI.ipynb		Kesh_Templates_newAPI.ipynb
WM_pathways_freesurfer_based_seg_EC_KMJmod.xlsx		WM_pathways_freesurfer_based_seg_EC_KMJmod.xlsx
apply_kesh_pipeline.py		apply_kesh_pipeline.py
calc_conf_CL.py		calc_conf_CL.py
clean_apply_kesh_pipeline_newapi.py		clean_apply_kesh_pipeline_newapi.py
kesh_autoseg_tools.py		kesh_autoseg_tools.py
kesh_pipeline_1of2_bundle_template_lookup.csv		kesh_pipeline_1of2_bundle_template_lookup.csv
kesh_pipeline_2of2_WM_pathways_freesurfer_based_seg_EC_KMJmod.csv		kesh_pipeline_2of2_WM_pathways_freesurfer_based_seg_EC_KMJmod.csv
make_template.py		make_template.py