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docs fix [InSty]
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karolamik13 committed Nov 28, 2024
1 parent 566d340 commit 12841bb
Showing 1 changed file with 10 additions and 10 deletions.
20 changes: 10 additions & 10 deletions prody/proteins/interactions.py
Original file line number Diff line number Diff line change
Expand Up @@ -3749,35 +3749,35 @@ def runDali(pdb, chain, **kwargs):
:arg cutoff_len: Length of aligned residues < cutoff_len (must be an integer or a float between 0 and 1)
See searchDali for more details
by default 0.5
Default is 0.5
:type cutoff_len: float
:arg cutoff_rmsd: RMSD cutoff (see searchDali)
by default 1.0
Default is 1.0
:type cutoff_rmsd: float
:arg subsetDali: fullPDB, PDB25, PDB50, PDB90
by default is 'fullPDB'
:type subsetDali: str
:arg subset_Dali: fullPDB, PDB25, PDB50, PDB90
Default is 'fullPDB'
:type subset_Dali: str
:arg fixer: The method for fixing lack of hydrogen bonds
by default is 'pdbfixer'
Default is 'pdbfixer'
:type fixer: 'pdbfixer' or 'openbabel'
:arg subset: subsets of atoms: 'ca', 'bb', 'heavy', 'noh', 'all' (see matchChains())
by default is 'ca'
Default is 'ca'
:type subset: str
:arg seqid: Minimum value of the sequence identity (see matchChains())
by default 5
Default 5
:type seqid: float
:arg overlap: percent overlap (see matchChains())
by default 50
Default 50
:type overlap: float
:arg folder_name: Folder where the results will be collected
by default is 'struc_homologs'
Default is 'struc_homologs'
:type folder_name: str
"""

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