actions for pytest

.github/workflows/run_test.yaml

@@ -0,0 +1,27 @@
+name: Run Unit Test via Pytest
+
+on: [push, pull_request]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.11"]
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+      - name: Test with pytest
+        run: |
+          coverage run -m pytest -v -s
+      - name: Generate Coverage Report
+        run: |
+          coverage report -m

.gitignore

@@ -1,19 +1,17 @@
-.idea/
 .*
 !.gitignore
 !.pre-commit-config.yaml
+!.github/
 __*__
+*.egg-info
 *.pyc
 *.txt
 *.fasta
-data/*
-*.csv
-.ipynb_checkpoints/
+*.out
 *.ipynb
 *.html
+*.csv
 *.json
+data/
 wandb/
 lightning_logs/
-output
-*.out
-*.egg-info

smtb/tests/test_model.py

@@ -3,7 +3,7 @@
 import pytest
 import torch
 
-from smtb.model import RegressionModel
+from ..model import RegressionModel
 
 
 @pytest.fixture

smtb/tests/test_pooling.py

@@ -1,7 +1,7 @@
 import pytest
 import torch
 
-from smtb.model import poolings
+from ..model import poolings
 
 
 @pytest.fixture