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  1. scverse/scvi-tools scverse/scvi-tools Public

    Deep probabilistic analysis of single-cell and spatial omics data

    Python 1.3k 357

  2. YosefLab/mrvi YosefLab/mrvi Public archive

    Multi-resolution Variational Inference

    Python 4

  3. azizilab/sdcd azizilab/sdcd Public

    Stable Differentiable Causal Discovery (SDCD)

    Jupyter Notebook 16 2

  4. songlab-cal/rna-sieve songlab-cal/rna-sieve Public

    A library for the deconvolution of bulk cell samples using single-cell RNA expression data.

    Mathematica 21 4