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Various bug fixes and some new features #62

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@julienbesle julienbesle commented Mar 9, 2020

Here are a number of commits I have made to my fork in the last 2 and a half years. These mostly include changes to the GLM_v2 and viewGUI plugins, but also bug fixes and a few new features in other mrLoadRet functions.

Bug fixes include:

  • a fix for mlrAdjustGUI.m with a few menu properties whose name changed around Matlab version 9.4 (fixes R2019a weirdness with plugins #61)
  • fixed issues with new graphic object handle class in glmPlot.m

New features include

  • option to import a specific frame from a 4D nifti file as base anatomy (loadAnat.m)
  • option to export ROIs as Freesurfer label files
  • made convertROICorticalDepth.m scriptable.
  • option of extend surface ROIs into white matter by using negative cortical depths

None of these changes should affect the default behaviour of mrTools.

Cheers
Julien

jb85aub and others added 26 commits July 23, 2019 12:29
…rom the GUI by calling mlrImportFreesurferLabel.m
…or message when an error is caught in the call to the ROI/overlay combine/transform function
…h (although mrParamsDialo does not seem to enforce this), moved removal of all voxels to the end of the function, and added some explanatory comments
…els that span two distant cortical locations (but not satisfactory yet)
…oxels belonging to distant locations on cortex
@julienbesle julienbesle changed the title Various bug fixes and Various bug fixes and some new features Mar 9, 2020
julienbesle and others added 30 commits August 9, 2023 15:51
pRFsomatoFit.m: Fixing minor bug when setting pref dig/pd with different size of stim grid
add pRF fit for 1d Gaussian for 4 digits
…NI space (using SPM12), and then importing the normalization information into mrLoadRet for conversion of coordinates to MNI space
… the Undo function can be used (only for the currently selected ROI)
…g coords to indices) to avoid choking on ROi coordinates outside the volume)
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R2019a weirdness with plugins
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