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@jump-cellpainting

JUMP-Cell Painting Consortium

Joint Undertaking in Morphological Profiling

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  1. datasets datasets Public

    Images and other data from the JUMP Cell Painting Consortium

    Shell 162 17

  2. 2024_Chandrasekaran_NatureMethods 2024_Chandrasekaran_NatureMethods Public

    Jupyter Notebook 55 11

  3. JUMP-Target JUMP-Target Public

    Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays

    20 5

  4. JUMP-MOA JUMP-MOA Public

    A list of compounds with diverse MOAs that fit on a single 384-well plate, with 4 replicates per compound

    6 3

  5. profiling-recipe profiling-recipe Public

    Forked from cytomining/profiling-recipe

    Image-based Profiling Recipe

    Python 5 4

  6. embedder embedder Public

    Computing per-cell embeddings for all cpg0016-jump

    Python 2 1

Repositories

Showing 10 of 16 repositories
  • datasets Public

    Images and other data from the JUMP Cell Painting Consortium

    jump-cellpainting/datasets’s past year of commit activity
    Shell 162 BSD-3-Clause 17 35 (1 issue needs help) 1 Updated Nov 20, 2024
  • jump-cellpainting/2024_Chandrasekaran_Morphmap’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 3 0 0 Updated Nov 20, 2024
  • JUMP-Target Public

    Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays

    jump-cellpainting/JUMP-Target’s past year of commit activity
    20 MIT 5 1 0 Updated Nov 15, 2024
  • pilot-cpjump1-data Public archive

    [OUTDATED] JUMP-CP CPJUMP1 data

    jump-cellpainting/pilot-cpjump1-data’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Nov 14, 2024
  • jump-cellpainting/2024_Chandrasekaran_NatureMethods’s past year of commit activity
    Jupyter Notebook 55 BSD-3-Clause 11 4 0 Updated Nov 14, 2024
  • cpg0016-jump-orf-data Public

    Data repository for cpg0016-jump[orf]

    jump-cellpainting/cpg0016-jump-orf-data’s past year of commit activity
    1 BSD-3-Clause 1 0 2 Updated Oct 21, 2024
  • compound-annotator Public archive
    jump-cellpainting/compound-annotator’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 4 4 0 Updated Oct 20, 2024
  • embedder Public

    Computing per-cell embeddings for all cpg0016-jump

    jump-cellpainting/embedder’s past year of commit activity
    Python 2 Apache-2.0 1 2 0 Updated May 31, 2024
  • JUMP-MOA Public

    A list of compounds with diverse MOAs that fit on a single 384-well plate, with 4 replicates per compound

    jump-cellpainting/JUMP-MOA’s past year of commit activity
    6 MIT 3 0 0 Updated Apr 7, 2024
  • jump-cellpainting/jump-scope-analysis’s past year of commit activity
    Jupyter Notebook 0 0 3 0 Updated Jun 14, 2023

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