Merge pull request #56 from jts/change_annotate_variant_rule

Change annotate variant rule
jts · Dec 17, 2020 · 8a1841e · 8a1841e
2 parents db9e988 + 90b02dc
commit 8a1841e
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diff --git a/README.md b/README.md
@@ -206,7 +206,7 @@ snakemake -s workflow/Snakefile --cores 1 build_snpeff_db
 Once the database has been built, the workflow can be run using:
 
 ```
-snakemake -s workflow/Snakefile --cores 2 annotate_variants
+snakemake -s workflow/Snakefile --cores 2 all_qc_annotation
 ```
 
 Variant annotation output can be found in `qc_annotation` and the recurrent

diff --git a/workflow/rules/annotation.smk b/workflow/rules/annotation.smk
@@ -34,7 +34,7 @@ def get_recurrent_heatmap_plot(wildcards):
 #
 # Rules for annotating variants with functional consequence
 #
-rule annotate_variants:
+rule all_qc_annotation:
     input:
         get_recurrent_heatmap_plot