Update README.md

added `primer_prefix` config parameter to handle changes made to ARTIC V4.1 primer name
jts · Feb 23, 2022 · 2ecedfc · 2ecedfc
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diff --git a/README.md b/README.md
@@ -144,6 +144,11 @@ mutation_set: spike_mutations
 # defaults to just current working directory but otherwise
 # will write output files to the specified directory
 output_directory: run1_output
+
+# primer name prefix used in the primer scheme BED file, the default
+# value is "nCoV-2019" which is used for ARTIC V3, note that
+# ARTIC V4.1 uses `SARS-CoV-2`
+primer_prefix: "SARS-CoV-2"
 ```
 
 ## Running