moving files into place

vignettes/sbc.Rmd

@@ -15,9 +15,6 @@ params:
   n_pseudospecies_augmented: 50
 ---
 
-Under construction: figures currently missing.
-
-
 ```r
 params <- list(
   n_sims = 1000,
@@ -142,19 +139,19 @@ rep_constant_results <- compute_SBC(rep_constant_dataset, rep_constant_backend)
 plot_ecdf(rep_constant_results)
 ```
 
-![plot of chunk rep-constant](figure/rep-constant-1.png)
+![plot of chunk rep-constant](../man/figures/vignettes/sbc/rep-constant-1.png)
 
 ```r
 plot_rank_hist(rep_constant_results)
 ```
 
-![plot of chunk rep-constant](figure/rep-constant-2.png)
+![plot of chunk rep-constant](../man/figures/vignettes/sbc/rep-constant-2.png)
 
 ```r
 plot_ecdf_diff(rep_constant_results)
 ```
 
-![plot of chunk rep-constant](figure/rep-constant-3.png)
+![plot of chunk rep-constant](../man/figures/vignettes/sbc/rep-constant-3.png)
 
 ### Rep-varying
 
@@ -257,19 +254,19 @@ rep_varying_results <- compute_SBC(rep_varying_dataset, rep_varying_backend)
 plot_ecdf(rep_varying_results)
 ```
 
-![plot of chunk rep-varying](figure/rep-varying-1.png)
+![plot of chunk rep-varying](../man/figures/vignettes/sbc/rep-varying-1.png)
 
 ```r
 plot_rank_hist(rep_varying_results)
 ```
 
-![plot of chunk rep-varying](figure/rep-varying-2.png)
+![plot of chunk rep-varying](../man/figures/vignettes/sbc/rep-varying-2.png)
 
 ```r
 plot_ecdf_diff(rep_varying_results)
 ```
 
-![plot of chunk rep-varying](figure/rep-varying-3.png)
+![plot of chunk rep-varying](../man/figures/vignettes/sbc/rep-varying-3.png)
 
 
 ## Multi-season
@@ -394,19 +391,19 @@ colex_ex_results <- compute_SBC(colex_ex_dataset, colex_ex_backend)
 plot_ecdf(colex_ex_results)
 ```
 
-![plot of chunk multi-colex-ex](figure/multi-colex-ex-1.png)
+![plot of chunk multi-colex-ex](../man/figures/vignettes/sbc/multi-colex-ex-1.png)
 
 ```r
 plot_rank_hist(colex_ex_results)
 ```
 
-![plot of chunk multi-colex-ex](figure/multi-colex-ex-2.png)
+![plot of chunk multi-colex-ex](../man/figures/vignettes/sbc/multi-colex-ex-2.png)
 
 ```r
 plot_ecdf_diff(colex_ex_results)
 ```
 
-![plot of chunk multi-colex-ex](figure/multi-colex-ex-3.png)
+![plot of chunk multi-colex-ex](../man/figures/vignettes/sbc/multi-colex-ex-3.png)
 
 ### Colonization-extinction, equilibrium initial occupancy
 
@@ -530,19 +527,19 @@ colex_eq_results <- compute_SBC(colex_eq_dataset, colex_eq_backend)
 plot_ecdf(colex_eq_results)
 ```
 
-![plot of chunk multi-colex-eq](figure/multi-colex-eq-1.png)
+![plot of chunk multi-colex-eq](../man/figures/vignettes/sbc/multi-colex-eq-1.png)
 
 ```r
 plot_rank_hist(colex_eq_results)
 ```
 
-![plot of chunk multi-colex-eq](figure/multi-colex-eq-2.png)
+![plot of chunk multi-colex-eq](../man/figures/vignettes/sbc/multi-colex-eq-2.png)
 
 ```r
 plot_ecdf_diff(colex_eq_results)
 ```
 
-![plot of chunk multi-colex-eq](figure/multi-colex-eq-3.png)
+![plot of chunk multi-colex-eq](../man/figures/vignettes/sbc/multi-colex-eq-3.png)
 
 ### Autologistic, explicit initial occupancy
 
@@ -659,19 +656,19 @@ auto_ex_results <- compute_SBC(auto_ex_dataset, auto_ex_backend)
 plot_ecdf(auto_ex_results)
 ```
 
-![plot of chunk multi-auto-ex](figure/multi-auto-ex-1.png)
+![plot of chunk multi-auto-ex](../man/figures/vignettes/sbc/multi-auto-ex-1.png)
 
 ```r
 plot_rank_hist(auto_ex_results)
 ```
 
-![plot of chunk multi-auto-ex](figure/multi-auto-ex-2.png)
+![plot of chunk multi-auto-ex](../man/figures/vignettes/sbc/multi-auto-ex-2.png)
 
 ```r
 plot_ecdf_diff(auto_ex_results)
 ```
 
-![plot of chunk multi-auto-ex](figure/multi-auto-ex-3.png)
+![plot of chunk multi-auto-ex](../man/figures/vignettes/sbc/multi-auto-ex-3.png)
 
 ### Autologistic, equilibrium initial occupancy
 
@@ -789,19 +786,19 @@ auto_eq_results <- compute_SBC(auto_eq_dataset, auto_eq_backend)
 plot_ecdf(auto_eq_results)
 ```
 
-![plot of chunk multi-auto-eq](figure/multi-auto-eq-1.png)
+![plot of chunk multi-auto-eq](../man/figures/vignettes/sbc/multi-auto-eq-1.png)
 
 ```r
 plot_rank_hist(auto_eq_results)
 ```
 
-![plot of chunk multi-auto-eq](figure/multi-auto-eq-2.png)
+![plot of chunk multi-auto-eq](../man/figures/vignettes/sbc/multi-auto-eq-2.png)
 
 ```r
 plot_ecdf_diff(auto_eq_results)
 ```
 
-![plot of chunk multi-auto-eq](figure/multi-auto-eq-3.png)
+![plot of chunk multi-auto-eq](../man/figures/vignettes/sbc/multi-auto-eq-3.png)
 
 
 ## Data-augmented
@@ -970,16 +967,16 @@ aug_results <- compute_SBC(aug_dataset, aug_backend)
 plot_ecdf(aug_results)
 ```
 
-![plot of chunk data-augmented](figure/data-augmented-1.png)
+![plot of chunk data-augmented](../man/figures/vignettes/sbc/data-augmented-1.png)
 
 ```r
 plot_rank_hist(aug_results)
 ```
 
-![plot of chunk data-augmented](figure/data-augmented-2.png)
+![plot of chunk data-augmented](../man/figures/vignettes/sbc/data-augmented-2.png)
 
 ```r
 plot_ecdf_diff(aug_results)
 ```
 
-![plot of chunk data-augmented](figure/data-augmented-3.png)
+![plot of chunk data-augmented](../man/figures/vignettes/sbc/data-augmented-3.png)