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Merge pull request #86 from jsocolar/website-attempt-2
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jsocolar authored Oct 25, 2023
2 parents 773ef5b + 7f4f949 commit 0d607a4
Showing 1 changed file with 21 additions and 21 deletions.
42 changes: 21 additions & 21 deletions vignettes/sbc.Rmd
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Expand Up @@ -139,19 +139,19 @@ rep_constant_results <- compute_SBC(rep_constant_dataset, rep_constant_backend)
plot_ecdf(rep_constant_results)
```

![plot of chunk rep-constant](../reference/figures/vignettes/sbc/rep-constant-1.png)
![plot of chunk rep-constant](../reference/figures/sbc_vignette/rep-constant-1.png)

```r
plot_rank_hist(rep_constant_results)
```

![plot of chunk rep-constant](../reference/figures/vignettes/sbc/rep-constant-2.png)
![plot of chunk rep-constant](../reference/figures/sbc_vignette/rep-constant-2.png)

```r
plot_ecdf_diff(rep_constant_results)
```

![plot of chunk rep-constant](../reference/figures/vignettes/sbc/rep-constant-3.png)
![plot of chunk rep-constant](../reference/figures/sbc_vignette/rep-constant-3.png)

### Rep-varying

Expand Down Expand Up @@ -254,19 +254,19 @@ rep_varying_results <- compute_SBC(rep_varying_dataset, rep_varying_backend)
plot_ecdf(rep_varying_results)
```

![plot of chunk rep-varying](../reference/figures/vignettes/sbc/rep-varying-1.png)
![plot of chunk rep-varying](../reference/figures/sbc_vignette/rep-varying-1.png)

```r
plot_rank_hist(rep_varying_results)
```

![plot of chunk rep-varying](../reference/figures/vignettes/sbc/rep-varying-2.png)
![plot of chunk rep-varying](../reference/figures/sbc_vignette/rep-varying-2.png)

```r
plot_ecdf_diff(rep_varying_results)
```

![plot of chunk rep-varying](../reference/figures/vignettes/sbc/rep-varying-3.png)
![plot of chunk rep-varying](../reference/figures/sbc_vignette/rep-varying-3.png)


## Multi-season
Expand Down Expand Up @@ -391,19 +391,19 @@ colex_ex_results <- compute_SBC(colex_ex_dataset, colex_ex_backend)
plot_ecdf(colex_ex_results)
```

![plot of chunk multi-colex-ex](../reference/figures/vignettes/sbc/multi-colex-ex-1.png)
![plot of chunk multi-colex-ex](../reference/figures/sbc_vignette/multi-colex-ex-1.png)

```r
plot_rank_hist(colex_ex_results)
```

![plot of chunk multi-colex-ex](../reference/figures/vignettes/sbc/multi-colex-ex-2.png)
![plot of chunk multi-colex-ex](../reference/figures/sbc_vignette/multi-colex-ex-2.png)

```r
plot_ecdf_diff(colex_ex_results)
```

![plot of chunk multi-colex-ex](../reference/figures/vignettes/sbc/multi-colex-ex-3.png)
![plot of chunk multi-colex-ex](../reference/figures/sbc_vignette/multi-colex-ex-3.png)

### Colonization-extinction, equilibrium initial occupancy

Expand Down Expand Up @@ -527,19 +527,19 @@ colex_eq_results <- compute_SBC(colex_eq_dataset, colex_eq_backend)
plot_ecdf(colex_eq_results)
```

![plot of chunk multi-colex-eq](../reference/figures/vignettes/sbc/multi-colex-eq-1.png)
![plot of chunk multi-colex-eq](../reference/figures/sbc_vignette/multi-colex-eq-1.png)

```r
plot_rank_hist(colex_eq_results)
```

![plot of chunk multi-colex-eq](../reference/figures/vignettes/sbc/multi-colex-eq-2.png)
![plot of chunk multi-colex-eq](../reference/figures/sbc_vignette/multi-colex-eq-2.png)

```r
plot_ecdf_diff(colex_eq_results)
```

![plot of chunk multi-colex-eq](../reference/figures/vignettes/sbc/multi-colex-eq-3.png)
![plot of chunk multi-colex-eq](../reference/figures/sbc_vignette/multi-colex-eq-3.png)

### Autologistic, explicit initial occupancy

Expand Down Expand Up @@ -656,19 +656,19 @@ auto_ex_results <- compute_SBC(auto_ex_dataset, auto_ex_backend)
plot_ecdf(auto_ex_results)
```

![plot of chunk multi-auto-ex](../reference/figures/vignettes/sbc/multi-auto-ex-1.png)
![plot of chunk multi-auto-ex](../reference/figures/sbc_vignette/multi-auto-ex-1.png)

```r
plot_rank_hist(auto_ex_results)
```

![plot of chunk multi-auto-ex](../reference/figures/vignettes/sbc/multi-auto-ex-2.png)
![plot of chunk multi-auto-ex](../reference/figures/sbc_vignette/multi-auto-ex-2.png)

```r
plot_ecdf_diff(auto_ex_results)
```

![plot of chunk multi-auto-ex](../reference/figures/vignettes/sbc/multi-auto-ex-3.png)
![plot of chunk multi-auto-ex](../reference/figures/sbc_vignette/multi-auto-ex-3.png)

### Autologistic, equilibrium initial occupancy

Expand Down Expand Up @@ -786,19 +786,19 @@ auto_eq_results <- compute_SBC(auto_eq_dataset, auto_eq_backend)
plot_ecdf(auto_eq_results)
```

![plot of chunk multi-auto-eq](../reference/figures/vignettes/sbc/multi-auto-eq-1.png)
![plot of chunk multi-auto-eq](../reference/figures/sbc_vignette/multi-auto-eq-1.png)

```r
plot_rank_hist(auto_eq_results)
```

![plot of chunk multi-auto-eq](../reference/figures/vignettes/sbc/multi-auto-eq-2.png)
![plot of chunk multi-auto-eq](../reference/figures/sbc_vignette/multi-auto-eq-2.png)

```r
plot_ecdf_diff(auto_eq_results)
```

![plot of chunk multi-auto-eq](../reference/figures/vignettes/sbc/multi-auto-eq-3.png)
![plot of chunk multi-auto-eq](../reference/figures/sbc_vignette/multi-auto-eq-3.png)


## Data-augmented
Expand Down Expand Up @@ -967,16 +967,16 @@ aug_results <- compute_SBC(aug_dataset, aug_backend)
plot_ecdf(aug_results)
```

![plot of chunk data-augmented](../reference/figures/vignettes/sbc/data-augmented-1.png)
![plot of chunk data-augmented](../reference/figures/sbc_vignette/data-augmented-1.png)

```r
plot_rank_hist(aug_results)
```

![plot of chunk data-augmented](../reference/figures/vignettes/sbc/data-augmented-2.png)
![plot of chunk data-augmented](../reference/figures/sbc_vignette/data-augmented-2.png)

```r
plot_ecdf_diff(aug_results)
```

![plot of chunk data-augmented](../reference/figures/vignettes/sbc/data-augmented-3.png)
![plot of chunk data-augmented](../reference/figures/sbc_vignette/data-augmented-3.png)

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