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Pipeline for the European Variation Archive, implemented using Luigi from Spotify (https://github.com/spotify/luigi)
jorizci/eva-pipeline
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If you want to make the best use of the cluster, the pipeline must be launched in 3 steps. 1) Accessioning: A study must be run sequentially, so the file with chromosome 1 is always processed before chromosome 2, and so on. But all chromosome 1 for different studies can be processed at the same time. 2) Transformation: This can be run in parallel without any conflicts, so feel free to launch as many files as possible simultaneously. 3) Loading: If a study is composed of a single file or split in chromosomes, then all its files can be processed in parallel.
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Pipeline for the European Variation Archive, implemented using Luigi from Spotify (https://github.com/spotify/luigi)
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