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Jordan DeKraker - B. Bernhardt Lab committed May 1, 2023
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55 changes: 28 additions & 27 deletions background.html
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<header>
<h1>Background</h1>
</header>
<main>
<section>
<h2>About Me</h2>
<img src="img/background.jpg" alt="Jordan's background" class="background-image">
<p>I am a neuroscientist with expertise in MRI and cognitive psychology. My research interests include the neural basis of memory and navigation, the development of advanced MRI analysis techniques, and the application of these techniques to understanding brain disorders such as major depressive disorder and Alzheimer's disease.</p>
</section>
<section>
<h2>Education</h2>
<ul>
<li>Bachelor of Science in Neuroscience, Carleton University, Ottawa</li>
<li>Master of Science in Behavioural and Cognitive Psychology, Western University, London</li>
<li>Doctor of Philosophy in Neuroscience, Western University, London</li>
</ul>
</section>
<section>
<h2>Research Experience</h2>
<ul>
<li>Undergraduate Research Assistant, Carleton University, Ottawa, studying rodent cognition with a focus on memory and navigation</li>
<li>Graduate Research Assistant, Western University, London, working with Dr Stefan Kohler looking at neuroimaging of the hippocampus and behavioural tests of pattern separation in major depressive disorder</li>
<li>PhD Candidate, Western University, London, working with Dr Ali Khan and Dr Stefan Kohler to develop the software application "HippUnfold" designed to work with 7T MRI images in Canada and leverage prior knowledge about hippocampal shape and ontogeny</li>
<li>Postdoctoral Fellow, McGill University, Montreal, working with Dr Alan Evans and Dr Boris Bernhardt examining hippocampal microstructure in BigBrain, performing histology-scale technical refinements to HippUnfold, and combining data across MRI, multimodal histology, fMRI, and iEEG</li>
</ul>
</section>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>

<main>
<section>
<h2>About Me</h2>
<img src="img/headshot.JPG" alt="headshot" class="headshot-image">
<p>I am a neuroscientist with expertise in MRI and cognitive psychology. My research interests include the neural basis of memory and navigation, the development of advanced MRI analysis techniques, and the application of these techniques to understanding brain disorders such as major depressive disorder and Alzheimer's disease.</p>
</section>
<section>
<h2>Education</h2>
<ul>
<li>Bachelor of Science in Neuroscience, Carleton University, Ottawa</li>
<li>Master of Science in Behavioural and Cognitive Psychology, Western University, London</li>
<li>Doctor of Philosophy in Neuroscience, Western University, London</li>
</ul>
</section>
<section>
<h2>Research Experience</h2>
<ul>
<li>Undergraduate Research Assistant, Carleton University, Ottawa, studying rodent cognition with a focus on memory and navigation</li>
<li>Graduate Research Assistant, Western University, London, working with Dr Stefan Kohler looking at neuroimaging of the hippocampus and behavioural tests of pattern separation in major depressive disorder</li>
<li>PhD Candidate, Western University, London, working with Dr Ali Khan and Dr Stefan Kohler to develop the software application "HippUnfold" designed to work with 7T MRI images in Canada and leverage prior knowledge about hippocampal shape and ontogeny</li>
<li>Postdoctoral Fellow, McGill University, Montreal, working with Dr Alan Evans and Dr Boris Bernhardt examining hippocampal microstructure in BigBrain, performing histology-scale technical refinements to HippUnfold, and combining data across MRI, multimodal histology, fMRI, and iEEG</li>
</ul>
</section>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>
</body>
</html>
63 changes: 32 additions & 31 deletions contact.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8">
<title>Contact - Jordan Dekraker</title>
<meta charset="utf-8">
<title>Contact</title>
<link rel="stylesheet" type="text/css" href="style.css">
</head>
<body>
<header>
<nav>
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="background.html">Background</a></li>
<li><a href="research.html">Research Highlights</a></li>
<li><a href="software.html">Software</a></li>
<li><a href="contact.html" class="active">Contact / Links</a></li>
</ul>
</nav>
</header>
<body>
<nav>
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="background.html">Background</a></li>
<li><a href="research.html">Research Highlights</a></li>
<li><a href="software.html">Software</a></li>
<li><a href="contact.html">Contact/Links</a></li>
</ul>
</nav>
<header>
<h1>Contact</h1>
</header>

<main>
<h1>Contact Information</h1>
<p>I am currently working at McGill University in Montreal, Canada.</p>
<p>Please feel free to contact me via email:</p>
<ul>
<main>
<h1>Contact Information</h1>
<p>I am currently working at McGill University in Montreal, Canada.</p>
<p>Please feel free to contact me via email:</p>
<ul>
<li><a href="mailto:[email protected]">[email protected]</a></li>
</ul>
<p>You can also find me on the following websites:</p>
<ul>
<li><a href="https://github.com/jordandekraker">GitHub</a></li>
<li><a href="https://twitter.com/jordandekraker">Twitter</a></li>
<li><a href="https://www.linkedin.com/in/jordan-dekraker-b70874125/">LinkedIn</a></li>
</ul>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>
</body>
</ul>
<p>You can also find me on the following websites:</p>
<ul>
<li><a href="https://github.com/jordandekraker" target="_blank">GitHub</a></li>
<li><a href="https://twitter.com/jordandekraker" target="_blank">Twitter</a></li>
<li><a href="https://www.linkedin.com/in/jordan-dekraker-b70874125/" target="_blank">LinkedIn</a></li>
</ul>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>
</body>
</html>
2 changes: 1 addition & 1 deletion css/style.css
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text-align: center;
}

.background-image {
.headshot-image {
max-width: 100%;
height: auto;
}
23 changes: 12 additions & 11 deletions index.html
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<html>
<head>
<meta charset="utf-8">
<title>Jordan DeKraker - learning and the hippocampus</title>
<title>Home</title>
<link rel="stylesheet" type="text/css" href="css/style.css">
</head>
<body>
Expand All @@ -16,16 +16,17 @@
</ul>
</nav>
<header>
<h1>Welcome to My Professional Website</h1>
<h1>Jordan DeKraker - learning and the hippocampus</h1>
</header>
<main>
<section>
<h2>About Me</h2>
<p>I am a postdoc at McGill University working on neuroimaging of the hippocampus. </p>
</section>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>

<main>
<section>
<h2>About Me</h2>
<p>I am a postdoc at McGill University working on neuroimaging of the hippocampus. </p>
</section>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>
</body>
</html>
55 changes: 28 additions & 27 deletions research.html
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@@ -1,35 +1,36 @@
<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8">
<meta charset="utf-8">
<title>Research Highlights</title>
<link rel="stylesheet" type="text/css" href="style.css">
</head>
<body>
<header>
<nav>
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="background.html">Background</a></li>
<li><a href="research.html" class="active">Research Highlights</a></li>
<li><a href="software.html">Software</a></li>
<li><a href="contact.html">Contact / Links</a></li>
</ul>
</nav>
</header>
<body>
<nav>
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="background.html">Background</a></li>
<li><a href="research.html">Research Highlights</a></li>
<li><a href="software.html">Software</a></li>
<li><a href="contact.html">Contact/Links</a></li>
</ul>
</nav>
<header>
<h1>Research Highlights</h1>
</header>

<main>
<h1>Research Highlights</h1>
<ul>
<li>Developed a software application called HippUnfold, which leverages prior knowledge about hippocampal shape and ontogeny to work with some of the earliest/best 7T MRI images in Canada. Later, HippUnfold was made into a fully automated BIDS-App.</li>
<li>Examined hippocampal microstructure in BigBrain, performing histology-scale technical refinements to HippUnfold, and combining data across MRI, multimodal histology, fMRI, and iEEG.</li>
<li>Studied rodent cognition with a focus on memory and navigation during undergrad at Carleton University, Ottawa.</li>
<li>Investigated neuroimaging of the hippocampus and behavioural tests of pattern separation in major depressive disorder during masters in behavioural and cognitive psychology at Western University.</li>
<li>Conducted PhD research in neuroscience at Western University, working with Dr Ali Khan and Dr Stefan Kohler.</li>
</ul>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>
</body>
<main>
<h1>Research Highlights</h1>
<ul>
<li>Developed a software application called HippUnfold, which leverages prior knowledge about hippocampal shape and ontogeny to work with some of the earliest/best 7T MRI images in Canada. Later, HippUnfold was made into a fully automated BIDS-App.</li>
<li>Examined hippocampal microstructure in BigBrain, performing histology-scale technical refinements to HippUnfold, and combining data across MRI, multimodal histology, fMRI, and iEEG.</li>
<li>Studied rodent cognition with a focus on memory and navigation during undergrad at Carleton University, Ottawa.</li>
<li>Investigated neuroimaging of the hippocampus and behavioural tests of pattern separation in major depressive disorder during masters in behavioural and cognitive psychology at Western University.</li>
<li>Conducted PhD research in neuroscience at Western University, working with Dr Ali Khan and Dr Stefan Kohler.</li>
</ul>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>
</body>
</html>
51 changes: 26 additions & 25 deletions software.html
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<header>
<h1>Software</h1>
</header>
<main>
<section>
<h2>HippUnfold</h2>
<p><a href="https://github.com/khanlab/hippunfold">HippUnfold</a> is a software application designed to work with high-resolution MRI images of the hippocampus. It leverages prior knowledge about hippocampal shape and ontogeny to provide accurate and reliable measurements of hippocampal volume and shape.</p>
<p>The software was developed by Dr. Jordan DeKraker during their PhD at Western University along with Dr Ali Khan. It is now being maintained and extended by Jordan at McGill University and Ali at Western University.</p>
</section>
<section>
<h2>HippUnfold Toolbox</h2>
<p><a href="https://github.com/jordandekraker/hippunfold_toolbox">HippUnfold Toolbox</a> is a set of MATLAB and Python examples meant to show users of HippUnfold how to carry out more sophisticated analyses using HippUnfold. This includes custom code for mapping DWI and fMRI data, as well as surface-based second-level analyses. </p>
<p>The software was developed by Dr. Jordan DeKraker during their postdoctoral fellowship at McGill University.</p>
</section>
<section>
<h2>OldCortex</h2>
<p><a href="https://github.com/jordandekraker/OldCortex">OldCortex</a> is a software application designed to visualize the topology of the human cerebral cortex. </p>
<p>The software was developed by Dr. Jordan DeKraker during their postdoctoral fellowship at McGill University.</p>
</section>
<section>
<h2>TemporalPolarMap</h2>
<p><a href="https://github.com/jordandekraker/TemporalPolarMap">TemporalPolarMap</a> is a MATLAB toolbox for flatmapping the human anterior temporal lobe (or temporal pole). </p>
<p>The software was developed by Dr. Jordan DeKraker during their postdoctoral fellowship at McGill University.</p>
</section>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>

<main>
<section>
<h2>HippUnfold</h2>
<p><a href="https://github.com/khanlab/hippunfold">HippUnfold</a> is a software application designed to work with high-resolution MRI images of the hippocampus. It leverages prior knowledge about hippocampal shape and ontogeny to provide accurate and reliable measurements of hippocampal volume and shape.</p>
<p>The software was developed by Dr. Jordan DeKraker during their PhD at Western University along with Dr Ali Khan. It is now being maintained and extended by Jordan at McGill University and Ali at Western University.</p>
</section>
<section>
<h2>HippUnfold Toolbox</h2>
<p><a href="https://github.com/jordandekraker/hippunfold_toolbox">HippUnfold Toolbox</a> is a set of MATLAB and Python examples meant to show users of HippUnfold how to carry out more sophisticated analyses using HippUnfold. This includes custom code for mapping DWI and fMRI data, as well as surface-based second-level analyses. </p>
<p>The software was developed by Dr. Jordan DeKraker during their postdoctoral fellowship at McGill University.</p>
</section>
<section>
<h2>OldCortex</h2>
<p><a href="https://github.com/jordandekraker/OldCortex">OldCortex</a> is a software application designed to visualize the topology of the human cerebral cortex. </p>
<p>The software was developed by Dr. Jordan DeKraker during their postdoctoral fellowship at McGill University.</p>
</section>
<section>
<h2>TemporalPolarMap</h2>
<p><a href="https://github.com/jordandekraker/TemporalPolarMap">TemporalPolarMap</a> is a MATLAB toolbox for flatmapping the human anterior temporal lobe (or temporal pole). </p>
<p>The software was developed by Dr. Jordan DeKraker during their postdoctoral fellowship at McGill University.</p>
</section>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>
</body>
</html>

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