Test tool shed version as well

jmchilton · Nov 16, 2023 · ca5fce7 · ca5fce7
1 parent c3dc92b
commit ca5fce7
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Showing 2 changed files with 50 additions and 2 deletions.
diff --git a/lib/galaxy_test/base/uses_shed_api.py b/lib/galaxy_test/base/uses_shed_api.py
@@ -34,15 +34,28 @@ def install_repo_request(self, payload: Dict[str, Any]) -> Response:
         )
 
     def repository_operation(
-        self, operation: OperationT, owner: str, name: str, changeset: str, tool_shed_url: str = DEFAULT_TOOL_SHED_URL
+        self,
+        operation: OperationT,
+        owner: str,
+        name: str,
+        changeset: str,
+        tool_shed_url: str = DEFAULT_TOOL_SHED_URL,
+        tool_panel_section_id: Optional[str] = None,
     ) -> Dict[str, Any]:
         payload = {"tool_shed_url": tool_shed_url, "name": name, "owner": owner, "changeset_revision": changeset}
+        if tool_panel_section_id:
+            payload["tool_panel_section_id"] = tool_panel_section_id
         create_response = operation(payload)
         assert_status_code_is(create_response, 200)
         return create_response.json()
 
     def install_repository(
-        self, owner: str, name: str, changeset: str, tool_shed_url: str = DEFAULT_TOOL_SHED_URL
+        self,
+        owner: str,
+        name: str,
+        changeset: str,
+        tool_shed_url: str = DEFAULT_TOOL_SHED_URL,
+        tool_panel_section_id: Optional[str] = None,
     ) -> Dict[str, Any]:
         try:
             return self.repository_operation(
@@ -51,6 +64,7 @@ def install_repository(
                 name=name,
                 changeset=changeset,
                 tool_shed_url=tool_shed_url,
+                tool_panel_section_id=tool_panel_section_id,
             )
         except AssertionError as e:
             if "Error attempting to retrieve installation information from tool shed" in unicodify(e):

diff --git a/test/integration/test_panel_views.py b/test/integration/test_panel_views.py
@@ -1,6 +1,8 @@
 import os
+import time
 
 from galaxy_test.driver import integration_util
+from galaxy_test.driver.uses_shed import UsesShed
 
 THIS_DIR = os.path.dirname(__file__)
 PANEL_VIEWS_DIR_1 = os.path.join(THIS_DIR, "panel_views_1")
@@ -123,6 +125,38 @@ def test_only_latest_version_in_panel(self):
         assert tools[0]["version"] == "0.2"
 
 
+class TestPanelViewsWithShedTools(integration_util.IntegrationTestCase, UsesShed):
+    framework_tool_and_types = True
+    allow_tool_conf_override = False
+
+    @classmethod
+    def handle_galaxy_config_kwds(cls, config):
+        super().handle_galaxy_config_kwds(config)
+        config["panel_views_dir"] = PANEL_VIEWS_DIR_1
+
+    def test_only_latest_version_in_panel_fastp(self):
+        FASTP_REPO = {"name": "fastp", "owner": "iuc", "tool_panel_section_id": "test_section_multi"}
+        OLD_CHANGESET = "1d8fe9bc4cb0"
+        NEW_CHANGESET = "dbf9c561ef29"
+        self.install_repository(**FASTP_REPO, changeset=OLD_CHANGESET)
+        self.install_repository(**FASTP_REPO, changeset=NEW_CHANGESET)
+
+        # give the toolbox a moment to reload after repo installation
+        time.sleep(5)
+        index = self.galaxy_interactor.get("tools", data=dict(in_panel=True, view="custom_13"))
+        index.raise_for_status()
+        index_as_list = index.json()
+        sections = [x for x in index_as_list if x["model_class"] == "ToolSection"]
+        assert len(sections) == 1
+        section = sections[0]
+        assert section["id"] == "test_section_multi"
+        tools = section["elems"]
+        assert len(tools) == 2, len(tools)
+        fastp = tools[0]
+        assert fastp["id"] == "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0"
+        assert fastp["tool_shed_repository"]["changeset_revision"] == NEW_CHANGESET
+
+
 class TestPanelViewsFromConfigIntegration(integration_util.IntegrationTestCase):
     framework_tool_and_types = True