Skip to content

Commit

Permalink
Merge branch 'release_24.1' into release_24.2
Browse files Browse the repository at this point in the history
  • Loading branch information
mvdbeek committed Nov 21, 2024
2 parents 191de77 + c290421 commit 77b7f58
Show file tree
Hide file tree
Showing 2 changed files with 48 additions and 1 deletion.
46 changes: 46 additions & 0 deletions lib/galaxy/schema/generics.py
Original file line number Diff line number Diff line change
@@ -1,12 +1,15 @@
import sys
from typing import (
Any,
Generic,
Tuple,
Type,
TypeVar,
)

from pydantic import BaseModel
from pydantic.json_schema import GenerateJsonSchema
from typing_extensions import override

from galaxy.schema.fields import (
DecodedDatabaseIdField,
Expand Down Expand Up @@ -50,3 +53,46 @@ def get_defs_ref(self, core_mode_ref):
for i, choice in enumerate(choices):
choices[i] = choice.replace(choices[0], ref_to_name[ref]) # type: ignore[call-overload]
return full_def


class PatchGenericPickle:
"""A mixin that allows generic pydantic models to be serialized and deserialized with pickle.
Notes
----
In general, pickle shouldn't be encouraged as a means of serialization since there are better,
safer options. In some cases e.g. Streamlit's `@st.cache_data there's no getting around
needing to use pickle.
As of Pydantic 2.7, generics don't properly work with pickle. The core issue is the following
1. For each specialized generic, pydantic creates a new subclass at runtime. This class
has a `__qualname__` that contains the type var argument e.g. `"MyGeneric[str]"` for a
`class MyGeneric(BaseModel, Generic[T])`.
2. Pickle attempts to find a symbol with the value of `__qualname__` in the module where the
class was defined, which fails since Pydantic defines that class dynamically at runtime.
Pydantic does attempt to register these dynamic classes but currently only for classes
defined at the top-level of the interpreter.
See Also
--------
- https://github.com/pydantic/pydantic/issues/9390
"""

@classmethod
@override
def __init_subclass__(cls, **kwargs):
# Note: we're still in __init_subclass__, not yet in __pydantic_init_subclass__
# not all model_fields are available at this point.
super().__init_subclass__(**kwargs)

if not issubclass(cls, BaseModel):
raise TypeError("PatchGenericPickle can only be used with subclasses of pydantic.BaseModel")
if not issubclass(cls, Generic): # type: ignore [arg-type]
raise TypeError("PatchGenericPickle can only be used with Generic models")

qualname = cls.__qualname__
declaring_module = sys.modules[cls.__module__]
if qualname not in declaring_module.__dict__:
# This should work in all cases, but we might need to make this check and update more
# involved e.g. see pydantic._internal._generics.create_generic_submodel
declaring_module.__dict__[qualname] = cls
3 changes: 2 additions & 1 deletion lib/galaxy/schema/notifications.py
Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,7 @@
from galaxy.schema.generics import (
DatabaseIdT,
GenericModel,
PatchGenericPickle,
)
from galaxy.schema.schema import Model
from galaxy.schema.types import (
Expand Down Expand Up @@ -275,7 +276,7 @@ class NotificationCreateData(Model):
)


class GenericNotificationRecipients(GenericModel, Generic[DatabaseIdT]):
class GenericNotificationRecipients(GenericModel, Generic[DatabaseIdT], PatchGenericPickle):
"""The recipients of a notification. Can be a combination of users, groups and roles."""

user_ids: List[DatabaseIdT] = Field(
Expand Down

0 comments on commit 77b7f58

Please sign in to comment.