Rebase...

jmchilton · Feb 18, 2024 · 5380655 · 5380655
1 parent 26f5f51
commit 5380655
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Showing 3 changed files with 6 additions and 11 deletions.
diff --git a/lib/galaxy/tool_util/verify/interactor.py b/lib/galaxy/tool_util/verify/interactor.py
@@ -1463,12 +1463,7 @@ def verify_tool(
     if not use_legacy_api:
         structured_inputs = galaxy_interactor.get_tool_inputs(tool_id, tool_version=tool_version)
         assert structured_inputs
-    testdef = ToolTestDescription.from_dict(
-        tool_test_dict,
-        tool_id,
-        test_index,
-        maxseconds
-    )
+    testdef = ToolTestDescription.from_dict(tool_test_dict, tool_id, test_index, maxseconds)
     _handle_def_errors(testdef)
 
     created_history = False
@@ -1842,7 +1837,7 @@ def from_dict(raw_dict: ToolTestDescriptionDict, tool_id: str, test_index: int,
                 test_index=raw_dict.get("test_index") or test_index,
                 inputs=raw_dict["inputs"],
                 exception=exception,
-                maxseconds=maxseconds
+                maxseconds=maxseconds,
             )
         else:
             processed_test_dict = ValidToolTestDict(

diff --git a/lib/galaxy/tool_util/verify/script.py b/lib/galaxy/tool_util/verify/script.py
@@ -341,7 +341,9 @@ def build_case_references(
                     test_references.append(test_reference)
     else:
         assert tool_id
-        tool_test_dicts: List[ToolTestDescriptionDict] = galaxy_interactor.get_tool_tests(tool_id, tool_version=tool_version)
+        tool_test_dicts: List[ToolTestDescriptionDict] = galaxy_interactor.get_tool_tests(
+            tool_id, tool_version=tool_version
+        )
         for i, tool_test_dict in enumerate(tool_test_dicts):
             this_tool_version = tool_test_dict.get("tool_version") or tool_version
             this_test_index = i

diff --git a/lib/galaxy/webapps/galaxy/api/jobs.py b/lib/galaxy/webapps/galaxy/api/jobs.py
@@ -387,9 +387,7 @@ def outputs(
         for association in associations:
             output_associations.append(JobOutputAssociation(name=association.name, dataset=association.dataset))
 
-        output_associations.extend(
-            self.service.dictify_output_collection_associations(trans, job)
-        )
+        output_associations.extend(self.service.dictify_output_collection_associations(trans, job))
         return output_associations
 
     @router.get(