Expose more tool information / navigability in UI.

We had a specific request that job parameter displays that "For: Job parameters as table. The output doesn't show what tool was used, it would be good if it did." I don't want to populate the widget directly with information because it might disrupt the flow of the report but I agree it should be navigable.

So I have augmented the widget such that is a title is added - a little info icon will appear in the title span that will show a link to the tool and render the name as it would appear in the tool form. This information should be available in other places for the same reason IMO. So this popover is now used in the job metrics table the same way as well as in the workflow step display Markdown component and in the invocation step display component.

client/src/components/Markdown/Elements/JobMetrics.vue

@@ -1,22 +1,46 @@
 <script setup lang="ts">
+import { computed, watch } from "vue";
+
+import { useJobStore } from "@/stores/jobStore";
+
 import JobMetrics from "@/components/JobMetrics/JobMetrics.vue";
+import ToolLinkPopover from "@/components/Tool/ToolLinkPopover.vue";
 
 interface JobMetricsProps {
     jobId: string;
     title?: string;
     footer?: string;
 }
 
-withDefaults(defineProps<JobMetricsProps>(), {
+const props = withDefaults(defineProps<JobMetricsProps>(), {
     title: null,
     footer: null,
 });
+
+const jobStore = useJobStore();
+
+const toolId = computed(() => {
+    return jobStore.getJob(props.jobId)?.tool_id;
+});
+const toolVersion = computed(() => {
+    return jobStore.getJob(props.jobId)?.tool_version;
+});
+
+watch(
+    props,
+    () => {
+        jobStore.fetchJob(props.jobId);
+    },
+    { immediate: true }
+);
 </script>
 
 <template>
     <b-card nobody>
         <b-card-title v-if="title">
             <b>{{ title }}</b>
+            <icon ref="info" icon="info-circle" size="sm" />
+            <ToolLinkPopover :target="() => $refs.info" :tool-id="toolId" :tool-version="toolVersion" />
         </b-card-title>
         <JobMetrics
             class="job-metrics"

client/src/components/Markdown/Elements/JobParameters.vue

@@ -1,5 +1,10 @@
 <script setup lang="ts">
+import { computed, watch } from "vue";
+
+import { useJobStore } from "@/stores/jobStore";
+
 import JobParameters from "@/components/JobParameters/JobParameters.vue";
+import ToolLinkPopover from "@/components/Tool/ToolLinkPopover.vue";
 
 interface JobParametersProps {
     jobId: string;
@@ -8,17 +13,36 @@ interface JobParametersProps {
     footer?: string;
 }
 
-withDefaults(defineProps<JobParametersProps>(), {
+const props = withDefaults(defineProps<JobParametersProps>(), {
     param: undefined,
     title: null,
     footer: null,
 });
+
+const jobStore = useJobStore();
+
+const toolId = computed(() => {
+    return jobStore.getJob(props.jobId)?.tool_id;
+});
+const toolVersion = computed(() => {
+    return jobStore.getJob(props.jobId)?.tool_version;
+});
+
+watch(
+    props,
+    () => {
+        jobStore.fetchJob(props.jobId);
+    },
+    { immediate: true }
+);
 </script>
 
 <template>
     <b-card nobody>
         <b-card-title v-if="title">
             <b>{{ title }}</b>
+            <icon ref="info" icon="info-circle" size="sm" />
+            <ToolLinkPopover :target="() => $refs.info" :tool-id="toolId" :tool-version="toolVersion" />
         </b-card-title>
         <JobParameters class="job-parameters" :job-id="jobId" :param="param" :include-title="false" />
         <b-card-footer v-if="footer">

client/src/components/Markdown/Elements/Workflow/WorkflowDisplay.vue

@@ -7,6 +7,7 @@ import { isEmpty } from "@/utils/utils";
 
 import WorkflowTree from "./WorkflowTree.vue";
 import LoadingSpan from "@/components/LoadingSpan.vue";
+import ToolLinkPopover from "@/components/Tool/ToolLinkPopover.vue";
 import WorkflowStepIcon from "@/components/WorkflowInvocationState/WorkflowStepIcon.vue";
 import WorkflowStepTitle from "@/components/WorkflowInvocationState/WorkflowStepTitle.vue";
 
@@ -104,7 +105,14 @@ onMounted(async () => {
                 </b-alert>
                 <div v-if="itemContent !== null">
                     <div v-for="step in itemContent?.steps" :key="step.order_index" class="mb-2">
-                        <WorkflowStepIcon v-if="step.type" :step-type="step.type" />
+                        <span :id="`step-icon-${step.order_index}`">
+                            <WorkflowStepIcon v-if="step.type" :step-type="step.type" />
+                        </span>
+                        <ToolLinkPopover
+                            v-if="step.type == 'tool'"
+                            :target="`step-icon-${step.order_index}`"
+                            :tool-id="step.tool_id"
+                            :tool-version="step.tool_version" />
                         <WorkflowStepTitle
                             :step-tool-id="step.tool_id"
                             :step-subworkflow-id="step.subworkflow_id"

client/src/components/Tool/ToolLink.vue

@@ -0,0 +1,41 @@
+<script setup lang="ts">
+import { computed, watch } from "vue";
+
+import { useToolStore } from "@/stores/toolStore";
+
+const toolStore = useToolStore();
+
+interface ToolLinkProps {
+    toolId: string;
+    toolVersion: string;
+}
+
+const props = defineProps<ToolLinkProps>();
+
+const toolName = computed(() => {
+    if (props.toolId) {
+        return toolStore.getToolNameById(props.toolId);
+    }
+    return "";
+});
+
+const toolLink = computed(() => {
+    return `/root?tool_id=${props.toolId}&tool_version=${props.toolVersion}`;
+});
+
+watch(
+    props,
+    () => {
+        if (props.toolId && !toolStore.getToolForId(props.toolId)) {
+            toolStore.fetchToolForId(props.toolId);
+        }
+    },
+    { immediate: true }
+);
+</script>
+
+<template>
+    <router-link :to="toolLink">
+        <b>{{ toolName || toolId }}</b> (Galaxy Version {{ toolVersion }})
+    </router-link>
+</template>

client/src/components/Tool/ToolLinkPopover.vue

@@ -0,0 +1,24 @@
+<script setup lang="ts">
+import ToolLink from "./ToolLink.vue";
+
+interface ToolLinkPopoverProps {
+    target: string | Function;
+    toolId?: string;
+    toolVersion?: string;
+}
+
+withDefaults(defineProps<ToolLinkPopoverProps>(), {
+    toolId: null,
+    toolVersion: null,
+});
+
+// default boundary of scrollParent doesn't work well at all in the workflow display list
+const boundary = "window";
+</script>
+
+<template>
+    <b-popover v-if="toolId" :boundary="boundary" :target="target" triggers="hover">
+        Tool:
+        <ToolLink :tool-id="toolId" :tool-version="toolVersion || 'latest'" />
+    </b-popover>
+</template>

client/src/components/WorkflowInvocationState/WorkflowInvocationStep.vue

@@ -2,7 +2,10 @@
     <div class="d-flex" :data-step="workflowStep.id">
         <div class="ui-portlet-section" style="width: 100%">
             <div class="portlet-header portlet-title portlet-operations cursor-pointer" @click="toggleStep">
-                <WorkflowStepIcon class="portlet-title-icon" :step-type="workflowStepType" />
+                <span :id="`step-icon-${workflowStep.id}`">
+                    <WorkflowStepIcon class="portlet-title-icon" :step-type="workflowStepType" />
+                </span>
+                <ToolLinkPopover :target="`step-icon-${workflowStep.id}`" v-bind="toolProps(workflowStep.id)" />
                 <span class="portlet-title-text">
                     <u class="step-title">
                         <WorkflowStepTitle v-bind="titleProps(workflowStep.id)" />
@@ -93,6 +96,7 @@ import { FontAwesomeIcon } from "@fortawesome/vue-fontawesome";
 import GenericHistoryItem from "components/History/Content/GenericItem";
 import LoadingSpan from "components/LoadingSpan";
 import { InvocationStepProvider } from "components/providers";
+import ToolLinkPopover from "components/Tool/ToolLinkPopover";
 import { mapActions as vuexMapActions, mapGetters } from "vuex";
 
 import JobStep from "./JobStep";
@@ -110,6 +114,7 @@ export default {
         ParameterStep,
         InvocationStepProvider,
         GenericHistoryItem,
+        ToolLinkPopover,
         WorkflowStepIcon,
         WorkflowStepTitle,
         WorkflowInvocationState: () => import("components/WorkflowInvocationState/WorkflowInvocationState"),
@@ -148,6 +153,13 @@ export default {
         toggleStep() {
             this.expanded = !this.expanded;
         },
+        toolProps(stepIndex) {
+            const workflowStep = this.workflow.steps[stepIndex];
+            return {
+                toolId: workflowStep.tool_id,
+                toolVersion: workflowStep.tool_version,
+            };
+        },
         titleProps(stepIndex) {
             const invocationStep = this.invocation.steps[stepIndex];
             const workflowStep = this.workflow.steps[stepIndex];

client/src/stores/jobStore.ts

@@ -12,6 +12,8 @@ import { getAppRoot } from "@/onload/loadConfig";
 /* interfaces */
 interface Job {
     id: string;
+    tool_id: string;
+    tool_version: string;
 }
 interface JobDef {
     tool_id: string;

lib/galaxy/managers/workflows.py

@@ -1140,6 +1140,8 @@ def do_inputs(inputs, values, prefix, step, other_values=None):
                 continue
             if step.type == "tool":
                 tool = trans.app.toolbox.get_tool(step.tool_id, step.tool_version)
+                step_dict["tool_id"] = step.tool_id
+                step_dict["tool_version"] = step.tool_version
                 step_dict["label"] = step.label or tool.name
                 step_dict["inputs"] = do_inputs(tool.inputs, step.state.inputs, "", step)
             elif step.type == "subworkflow":

lib/galaxy/model/__init__.py

@@ -1820,6 +1820,7 @@ def to_dict(self, view="collection", system_details=False):
         else:
             rval = super().to_dict(view=view)
         rval["tool_id"] = self.tool_id
+        rval["tool_version"] = self.tool_version
         rval["history_id"] = self.history_id
         if system_details or view == "admin_job_list":
             # System level details that only admins should have.