Integration

Initial bug fixes for tool shed 2. #2909

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Run time

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Job	Run time
Test (3.7, 0)	56m 0s
Test (3.7, 1)	55m 14s
Test (3.7, 2)	59m 26s
Test (3.7, 3)	1h 18m 48s
	4h 9m 28s