Rebuild schema for sample sheets. #4085
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Toolshed tests | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'doc/**' | |
| - 'lib/galaxy_test/selenium/**' | |
| pull_request: | |
| paths-ignore: | |
| - 'doc/**' | |
| - 'lib/galaxy_test/selenium/**' | |
| env: | |
| GALAXY_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8' | |
| TOOL_SHED_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/toolshed?client_encoding=utf8' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.8', '3.13'] | |
| shed-api: ['v1', 'v2'] | |
| test-install-client: ['galaxy_api', 'standalone'] | |
| services: | |
| postgres: | |
| image: postgres:13 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: 'galaxy root' | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: '18.12.1' | |
| cache: 'yarn' | |
| cache-dependency-path: 'galaxy root/client/yarn.lock' | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| cache-dependency-path: 'galaxy root/requirements.txt' | |
| - name: Get full Python version | |
| id: full-python-version | |
| shell: bash | |
| run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT | |
| - name: Cache galaxy venv | |
| uses: actions/cache@v4 | |
| with: | |
| path: 'galaxy root/.venv' | |
| key: gxy-venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-toolshed | |
| - name: Install dependencies | |
| run: ./scripts/common_startup.sh --dev-wheels --skip-client-build | |
| working-directory: 'galaxy root' | |
| - name: Build Frontend | |
| run: | | |
| . .venv/bin/activate | |
| cd lib/tool_shed/webapp/frontend | |
| yarn | |
| make client | |
| working-directory: 'galaxy root' | |
| - name: Install playwright | |
| run: | | |
| . .venv/bin/activate | |
| playwright install | |
| working-directory: 'galaxy root' | |
| - name: Run tests | |
| run: ./run_tests.sh -toolshed | |
| env: | |
| TOOL_SHED_TEST_INSTALL_CLIENT: ${{ matrix.test-install-client }} | |
| TOOL_SHED_API_VERSION: ${{ matrix.shed-api }} | |
| TOOL_SHED_TEST_BROWSER: ${{ matrix.shed-api == 'v1' && 'twill' || 'playwright' }} | |
| working-directory: 'galaxy root' | |
| - uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: Toolshed test results (${{ matrix.python-version }}, ${{ matrix.shed-api }}, ${{ matrix.test-install-client }}) | |
| path: 'galaxy root/run_toolshed_tests.html' |