Skip to content

Commit

Permalink
Merge branch 'main' into addnameswtw
Browse files Browse the repository at this point in the history
  • Loading branch information
javibio-git committed Oct 3, 2024
2 parents 5d03d91 + f7eaf41 commit 1cba2a2
Show file tree
Hide file tree
Showing 13 changed files with 28 additions and 28 deletions.
2 changes: 1 addition & 1 deletion docs/404.html
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@



<meta name="date" content="2024-09-25" />
<meta name="date" content="2024-09-30" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
Expand Down
2 changes: 1 addition & 1 deletion docs/About.md
Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@ These credits are based on our [course contributors table guidelines](https://gi
## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2024-09-25
## date 2024-09-30
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
##
## ─ Packages ───────────────────────────────────────────────────────────────────
Expand Down
4 changes: 2 additions & 2 deletions docs/about-the-authors.html
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@



<meta name="date" content="2024-09-25" />
<meta name="date" content="2024-09-30" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
Expand Down Expand Up @@ -275,7 +275,7 @@ <h1>About the Authors<a href="about-the-authors.html#about-the-authors" class="a
## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2024-09-25
## date 2024-09-30
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
##
## ─ Packages ───────────────────────────────────────────────────────────────────
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@



<meta name="date" content="2024-09-25" />
<meta name="date" content="2024-09-30" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
Expand Down
2 changes: 1 addition & 1 deletion docs/how-to-run-your-tool-in-anvil-with-wdl.html
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@



<meta name="date" content="2024-09-25" />
<meta name="date" content="2024-09-30" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
Expand Down
4 changes: 2 additions & 2 deletions docs/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@



<meta name="date" content="2024-09-25" />
<meta name="date" content="2024-09-30" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
Expand Down Expand Up @@ -134,7 +134,7 @@ <h1>
</div>
<div id="header">
<h1 class="title">AnVIL CoFests! 2024</h1>
<p class="date"><em>September 25, 2024</em></p>
<p class="date"><em>September 30, 2024</em></p>
</div>
<div id="what-are-cofests" class="section level1 unnumbered hasAnchor">
<h1>What are CoFests!?<a href="index.html#what-are-cofests" class="anchor-section" aria-label="Anchor link to header"></a></h1>
Expand Down
2 changes: 1 addition & 1 deletion docs/index.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
---
title: "AnVIL CoFests! 2024"
date: "September 25, 2024"
date: "September 30, 2024"
site: bookdown::bookdown_site
documentclass: book
bibliography: book.bib
Expand Down
12 changes: 6 additions & 6 deletions docs/organizer-guide.html
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@



<meta name="date" content="2024-09-25" />
<meta name="date" content="2024-09-30" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
Expand Down Expand Up @@ -156,12 +156,12 @@ <h2>Logistics<a href="organizer-guide.html#logistics" class="anchor-section" ari
<li>Polygenic Risk Score Analysis</li>
<li>Wrap a Tool (+ Intro AnVIL/WDL)</li>
</ul></li>
<li>Scientific Lead and AnVIL Outreach co-Lead for support</li>
<li>Scientific Lead and AnVIL Outreach coordinator for support</li>
<li>We expect 4-10 participants per track</li>
</ul>
<p>Prior to the CoFests, the scientific and AnVIL Outreach co-Leads will work together to enumerate some ideas for final products and post them publicly in this book.</p>
<p>Prior to the CoFests, the scientific lead and AnVIL Outreach coordinators will work together to enumerate some ideas for final products and post them publicly in this book.</p>
<div class="notice">
<p>The AnVIL Outreach co-Lead will help add content to this guide, onboard newer AnVIL users to the platform, and provide guidance on the final product / report out.</p>
<p>The AnVIL Outreach coordinator will help add content to this guide, onboard newer AnVIL users to the platform, and provide guidance on the final product / report out.</p>
</div>
</div>
<div id="final-product-report-out" class="section level2 unnumbered hasAnchor">
Expand Down Expand Up @@ -200,7 +200,7 @@ <h3>Day 1 (2.5 hours)<a href="organizer-guide.html#day-1-2.5-hours" class="ancho
</tr>
<tr class="odd">
<td align="center"><strong>Onboarding.</strong> Handle billing accounts and other logistics necessary to accomplish the work.</td>
<td align="center">30-60 minutes (AnVIL Outreach co-Lead)</td>
<td align="center">30-60 minutes (AnVIL Outreach coordinator)</td>
</tr>
<tr class="even">
<td align="center"><strong>Work-regroup, work-regroup.</strong> Formal collaboration work time left before dinner. (Groups may choose to work together informally after dinner too)</td>
Expand Down Expand Up @@ -229,7 +229,7 @@ <h3>Day 2 (3 hours)<a href="organizer-guide.html#day-2-3-hours" class="anchor-se
</tr>
<tr class="even">
<td align="center"><strong>Construct a “report out”.</strong> The report out may be a Google doc, Google slides, a GitHub repository, <a href="https://github.com/jhudsl/OTTR_Template_Website">a website</a>, an <a href="https://github.com/jhudsl/OTTR_Template">OTTR book</a>, etc.</td>
<td align="left">30-60 minutes (AnVIL Outreach co-Lead)</td>
<td align="left">30-60 minutes (AnVIL Outreach coordinator)</td>
</tr>
</tbody>
</table>
Expand Down
10 changes: 5 additions & 5 deletions docs/organizer-guide.md
Original file line number Diff line number Diff line change
Expand Up @@ -16,13 +16,13 @@ The inaugural AnVIL Community Conference (ACC) 2024 will take place on November
- Scalable Machine Learning and Data Science
- Polygenic Risk Score Analysis
- Wrap a Tool (+ Intro AnVIL/WDL)
- Scientific Lead and AnVIL Outreach co-Lead for support
- Scientific Lead and AnVIL Outreach coordinator for support
- We expect 4-10 participants per track

Prior to the CoFests, the scientific and AnVIL Outreach co-Leads will work together to enumerate some ideas for final products and post them publicly in this book.
Prior to the CoFests, the scientific lead and AnVIL Outreach coordinators will work together to enumerate some ideas for final products and post them publicly in this book.

::: {.notice}
The AnVIL Outreach co-Lead will help add content to this guide, onboard newer AnVIL users to the platform, and provide guidance on the final product / report out.
The AnVIL Outreach coordinator will help add content to this guide, onboard newer AnVIL users to the platform, and provide guidance on the final product / report out.
:::

## Final Product / Report Out {-}
Expand All @@ -43,12 +43,12 @@ It helps us a lot if you can fill out some basic [Report Out details](https://do
|:-------------------------:|:-----------:|
| **Problem statement.** Provide background info on the track's overall topic and may include a brief summary of the pre-worked collaboration ideas. | 20-30 minutes (Scientific Lead) |
| **Brainstorming.** What project will the track tackle? Focus on understanding the participant backgrounds and skills and matching those with track ideas and actionable tasks to accomplish the goal. | 15-30 minutes (Both) |
| **Onboarding.** Handle billing accounts and other logistics necessary to accomplish the work. | 30-60 minutes (AnVIL Outreach co-Lead) |
| **Onboarding.** Handle billing accounts and other logistics necessary to accomplish the work. | 30-60 minutes (AnVIL Outreach coordinator) |
| **Work-regroup, work-regroup.** Formal collaboration work time left before dinner. (Groups may choose to work together informally after dinner too) | 30-60 minutes (N/A) |

### Day 2 (3 hours) {-}

| Task | Time & Lead |
|:-------------------------:|:------------|
| **Work-regroup, work-regroup.** Formal collaboration work time (with a coffee break). | 2-2.5 hours (N/A) |
| **Construct a "report out".** The report out may be a Google doc, Google slides, a GitHub repository, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc. | 30-60 minutes (AnVIL Outreach co-Lead) |
| **Construct a "report out".** The report out may be a Google doc, Google slides, a GitHub repository, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc. | 30-60 minutes (AnVIL Outreach coordinator) |
2 changes: 1 addition & 1 deletion docs/polygenic-risk-score-prs-analysis-in-anvil.html
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@



<meta name="date" content="2024-09-25" />
<meta name="date" content="2024-09-30" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
Expand Down
2 changes: 1 addition & 1 deletion docs/references.html
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@



<meta name="date" content="2024-09-25" />
<meta name="date" content="2024-09-30" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
Expand Down
2 changes: 1 addition & 1 deletion docs/search_index.json

Large diffs are not rendered by default.

10 changes: 5 additions & 5 deletions organizer-guide.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -16,13 +16,13 @@ The inaugural AnVIL Community Conference (ACC) 2024 will take place on November
- Scalable Machine Learning and Data Science
- Polygenic Risk Score Analysis
- Wrap a Tool (+ Intro AnVIL/WDL)
- Scientific Lead and AnVIL Outreach co-Lead for support
- Scientific Lead and AnVIL Outreach coordinator for support
- We expect 4-10 participants per track

Prior to the CoFests, the scientific and AnVIL Outreach co-Leads will work together to enumerate some ideas for final products and post them publicly in this book.
Prior to the CoFests, the scientific lead and AnVIL Outreach coordinators will work together to enumerate some ideas for final products and post them publicly in this book.

::: {.notice}
The AnVIL Outreach co-Lead will help add content to this guide, onboard newer AnVIL users to the platform, and provide guidance on the final product / report out.
The AnVIL Outreach coordinator will help add content to this guide, onboard newer AnVIL users to the platform, and provide guidance on the final product / report out.
:::

## Final Product / Report Out {-}
Expand All @@ -43,12 +43,12 @@ It helps us a lot if you can fill out some basic [Report Out details](https://do
|:-------------------------:|:-----------:|
| **Problem statement.** Provide background info on the track's overall topic and may include a brief summary of the pre-worked collaboration ideas. | 20-30 minutes (Scientific Lead) |
| **Brainstorming.** What project will the track tackle? Focus on understanding the participant backgrounds and skills and matching those with track ideas and actionable tasks to accomplish the goal. | 15-30 minutes (Both) |
| **Onboarding.** Handle billing accounts and other logistics necessary to accomplish the work. | 30-60 minutes (AnVIL Outreach co-Lead) |
| **Onboarding.** Handle billing accounts and other logistics necessary to accomplish the work. | 30-60 minutes (AnVIL Outreach coordinator) |
| **Work-regroup, work-regroup.** Formal collaboration work time left before dinner. (Groups may choose to work together informally after dinner too) | 30-60 minutes (N/A) |

### Day 2 (3 hours) {-}

| Task | Time & Lead |
|:-------------------------:|:------------|
| **Work-regroup, work-regroup.** Formal collaboration work time (with a coffee break). | 2-2.5 hours (N/A) |
| **Construct a "report out".** The report out may be a Google doc, Google slides, a GitHub repository, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc. | 30-60 minutes (AnVIL Outreach co-Lead) |
| **Construct a "report out".** The report out may be a Google doc, Google slides, a GitHub repository, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc. | 30-60 minutes (AnVIL Outreach coordinator) |

0 comments on commit 1cba2a2

Please sign in to comment.