Skip to content

Commit

Permalink
update hmw.csv as discussed in #10
Browse files Browse the repository at this point in the history
  • Loading branch information
jhpoelen committed Sep 12, 2022
1 parent 667d0c0 commit 2d6466c
Show file tree
Hide file tree
Showing 17 changed files with 18,960 additions and 18,945 deletions.
39 changes: 19 additions & 20 deletions hmw-prov.nq
View file
Original file line number Diff line number Diff line change
@@ -1,20 +1,19 @@
<https://preston.guoda.bio> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#SoftwareAgent> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<https://preston.guoda.bio> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Agent> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<https://preston.guoda.bio> <http://purl.org/dc/terms/description> "Preston is a software program that finds, archives and provides access to biodiversity datasets."@en <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Activity> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> <http://purl.org/dc/terms/description> "A crawl event that discovers biodiversity archives."@en <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> <http://www.w3.org/ns/prov#startedAtTime> "2022-08-25T13:12:30.634Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> <http://www.w3.org/ns/prov#wasStartedBy> <https://preston.guoda.bio> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<https://doi.org/10.5281/zenodo.1410543> <http://www.w3.org/ns/prov#usedBy> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<https://doi.org/10.5281/zenodo.1410543> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.org/dc/dcmitype/Software> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<https://doi.org/10.5281/zenodo.1410543> <http://purl.org/dc/terms/bibliographicCitation> "Jorrit Poelen, Icaro Alzuru, & Michael Elliott. 2021. Preston: a biodiversity dataset tracker (Version 0.0.1-SNAPSHOT) [Software]. Zenodo. http://doi.org/10.5281/zenodo.1410543"@en <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<urn:uuid:0659a54f-b713-4f86-a917-5be166a14110> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Entity> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<urn:uuid:0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/dc/terms/description> "A biodiversity dataset graph archive."@en <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<hash://sha256/da4d3dd5044e1280e2fac82e1bb4f042d9a7c9fba1fc7c35535b86690eef74a1> <http://www.w3.org/ns/prov#usedBy> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> .
<hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0> <http://www.w3.org/ns/prov#wasGeneratedBy> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> .
<hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0> <http://www.w3.org/ns/prov#qualifiedGeneration> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> .
<urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> <http://www.w3.org/ns/prov#generatedAtTime> "2022-08-25T13:17:58.807Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> .
<urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Generation> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> .
<urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> <http://www.w3.org/ns/prov#wasInformedBy> <urn:uuid:2f2d82ea-67a8-4b39-9d5b-779ce03bfd88> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> .
<urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> <http://www.w3.org/ns/prov#used> <https://github.com/plazi/treatments-xml/archive/master.zip> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> .
<https://github.com/plazi/treatments-xml/archive/master.zip> <http://purl.org/pav/hasVersion> <hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0> <urn:uuid:c228e7f8-3fe5-4b35-9388-3f46a2193298> .
<https://preston.guoda.bio> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#SoftwareAgent> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<https://preston.guoda.bio> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Agent> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<https://preston.guoda.bio> <http://purl.org/dc/terms/description> "Preston is a software program that finds, archives and provides access to biodiversity datasets."@en <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Activity> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> <http://purl.org/dc/terms/description> "A crawl event that discovers biodiversity archives."@en <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> <http://www.w3.org/ns/prov#startedAtTime> "2022-09-12T21:08:38.104Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> <http://www.w3.org/ns/prov#wasStartedBy> <https://preston.guoda.bio> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<https://doi.org/10.5281/zenodo.1410543> <http://www.w3.org/ns/prov#usedBy> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<https://doi.org/10.5281/zenodo.1410543> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.org/dc/dcmitype/Software> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<https://doi.org/10.5281/zenodo.1410543> <http://purl.org/dc/terms/bibliographicCitation> "Jorrit Poelen, Icaro Alzuru, & Michael Elliott. 2021. Preston: a biodiversity dataset tracker (Version 0.0.1-SNAPSHOT) [Software]. Zenodo. http://doi.org/10.5281/zenodo.1410543"@en <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<urn:uuid:0659a54f-b713-4f86-a917-5be166a14110> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Entity> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<urn:uuid:0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/dc/terms/description> "A biodiversity dataset graph archive."@en <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> .
<hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2> <http://www.w3.org/ns/prov#wasGeneratedBy> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> .
<hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2> <http://www.w3.org/ns/prov#qualifiedGeneration> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> .
<urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> <http://www.w3.org/ns/prov#generatedAtTime> "2022-09-12T21:14:10.337Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> .
<urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Generation> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> .
<urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> <http://www.w3.org/ns/prov#wasInformedBy> <urn:uuid:19642f93-3612-47dd-8cb6-043a819d2b04> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> .
<urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> <http://www.w3.org/ns/prov#used> <https://github.com/plazi/treatments-xml/archive/master.zip> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> .
<https://github.com/plazi/treatments-xml/archive/master.zip> <http://purl.org/pav/hasVersion> <hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2> <urn:uuid:f16632cb-710c-4918-85d7-f0bfe9e45e1d> .
20 changes: 10 additions & 10 deletions hmw-sample-pretty.json
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0720FF8FFFAEF82F62E84EE9.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0720FF8FFFAEF82F62E84EE9.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0720FF8FFFAEF82F62E84EE9",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -35,7 +35,7 @@
"habitat": "Sandy, well-drained soils in habitats dominated by longleaf pines (Pinus palustris), turkey oaks (Quercus laevis), or live oaks (Q. virginiana)."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0722FF8CFA91F446685A4FCD.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0722FF8CFA91F446685A4FCD.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0722FF8CFA91F446685A4FCD",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -72,7 +72,7 @@
"habitat": "Well-drained soils in a wide variety of habitats ranging from perennial tropical forests at high elevations to arid thornscrub habitats at low elevations. Elevational range extends from near sea level to ¢.2500 m."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0722FF8DFF9BF45B6D904CB5.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0722FF8DFF9BF45B6D904CB5.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0722FF8DFF9BF45B6D904CB5",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -108,7 +108,7 @@
"habitat": "Deep, well-drained soils in a wide variety of habitats ranging from high-elevation cloud forests to perennial tropicalforests, tropical deciduous and semideciduous forests, and thorny xeric scrublands at low elevations. Elevational range extends from near sea level to ¢.2700 m."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0722FF8DFFAFFE5868E94C97.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0722FF8DFFAFFE5868E94C97.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0722FF8DFFAFFE5868E94C97",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -144,7 +144,7 @@
"habitat": "Deep, volcanic soils in small clearings in pine-oak-spruce forests. Elevational range is 2200 m to more than 3000 m."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0723FF8CFA49FACB61374DFF.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0723FF8CFA49FACB61374DFF.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0723FF8CFA49FACB61374DFF",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -181,7 +181,7 @@
"habitat": "Well-drained soils in a variety of habitats ranging from mixed conifer—hardwood forests at high elevations to open pasturelands near sea level. Elevational range is from nearsea level to ¢.3200 m."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0723FF8CFF4AF5E06C6842E5.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0723FF8CFF4AF5E06C6842E5.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0723FF8CFF4AF5E06C6842E5",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -218,7 +218,7 @@
"habitat": "Well-drained soils in mixed conifer-hardwood forests at elevations above ¢.2400 m, perhaps to timberline."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0723FF93FA42F3BF697E41B6.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0723FF93FA42F3BF697E41B6.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0723FF93FA42F3BF697E41B6",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -255,7 +255,7 @@
"habitat": "Well-drained soils in forests, forest clearings, and cultivated regions in eastern Panama and lowland habitats along the Pacific Coast of north-western Colombia. Elevational range is from near sea level to ¢.1200 m."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0724FF8AFA97F2F3690341B3.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0724FF8AFA97F2F3690341B3.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0724FF8AFA97F2F3690341B3",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -291,7 +291,7 @@
"habitat": "Sandy loams in open areas including mixed-grass prairies and pastures."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0724FF8BFF9AF2E86D4E4AC1.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0724FF8BFF9AF2E86D4E4AC1.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0724FF8BFF9AF2E86D4E4AC1",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down Expand Up @@ -327,7 +327,7 @@
"habitat": "Wide variety of open habitats ranging from tall-grass prairies to native and non-native grasslands and urban park settings. Populations of Plains Pocket Gopher also are known from oak-hickory savannas, mesquite prairies, and patches of deciduous forest surrounded by prairie habitats. Habitat preferences appear to be based more on soil type than vegetation, with individuals avoiding soils with less than 40% sand content or more than 30% clay and silt content."
}
{
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/01/31/87/0131878A0725FF89FA4DF4066865400A.xml",
"http://www.w3.org/ns/prov#wasDerivedFrom": "zip:hash://sha256/bc1371478e91bc93f4f16c60b705755b0efcffa3b2e3922e4f7dffbd3e51fea2!/treatments-xml-main/data/01/31/87/0131878A0725FF89FA4DF4066865400A.xml",
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/plazi+xml",
"docId": "0131878A0725FF89FA4DF4066865400A",
"docName": "hbmw_6_Geomyidae_0234.pdf.imf",
Expand Down
Loading

0 comments on commit 2d6466c

Please sign in to comment.